Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13a01
(590 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0059 + 40805196-40805381,40805593-40805925 35 0.042
03_05_0646 - 26385447-26385463,26385546-26385657,26385838-263859... 33 0.13
01_06_0258 + 27950196-27950749,27953670-27954570 33 0.17
12_02_0408 + 18659494-18660362,18660472-18660634,18660976-186611... 32 0.30
11_01_0300 + 2253957-2254245,2254783-2254850,2254967-2255098,225... 31 0.69
04_04_0054 + 22400278-22400420,22400545-22401037 29 2.1
03_01_0299 - 2323945-2324422,2324542-2324671,2324763-2324898 29 2.1
01_03_0050 + 11959421-11959736,11959892-11959960,11960641-119609... 29 2.1
09_04_0384 - 17153064-17154233 29 2.8
03_05_0781 + 27654764-27655429,27655902-27656004,27656535-276565... 29 2.8
02_05_1309 + 35627549-35627679,35628377-35629361 29 2.8
09_04_0038 - 13996505-13996836,13997047-13997077,13997307-139974... 29 3.7
07_01_0370 + 2749353-2749786,2749949-2750346,2750435-2750519,275... 29 3.7
04_04_1125 + 31085106-31085714 28 6.4
01_04_0056 + 15476868-15476896,15477581-15478259 28 6.4
12_02_0858 + 23740589-23743233,23743362-23743503,23744778-237449... 27 8.5
06_01_0514 - 3706178-3706787,3709334-3709441,3710425-3710810 27 8.5
05_05_0195 + 23142830-23143714,23144288-23144314,23144657-231448... 27 8.5
04_04_0824 - 28399144-28399385,28400193-28400312,28400422-284004... 27 8.5
04_03_1002 - 21617339-21617362,21618476-21618565,21618755-216194... 27 8.5
>01_07_0059 + 40805196-40805381,40805593-40805925
Length = 172
Score = 35.1 bits (77), Expect = 0.042
Identities = 20/38 (52%), Positives = 20/38 (52%)
Frame = +2
Query: 383 HHGHVEAAQLLSRFAVDFAKAADISGFG*VLAGRQSHG 496
HHGH A S FA FA A I GF V A R SHG
Sbjct: 124 HHGHHPAYSSSSSFAPSFAPAVRIQGFD-VAACRSSHG 160
>03_05_0646 -
26385447-26385463,26385546-26385657,26385838-26385957,
26386120-26386371
Length = 166
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +3
Query: 345 PSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKS 509
P S A+ P T D S SP PS++P P + R S ++ T +K+
Sbjct: 10 PDSKAATSSPLCLTLDNPTSTSTSPAVPSSAPPPAAALEPSRQSFHERETDAIKA 64
>01_06_0258 + 27950196-27950749,27953670-27954570
Length = 484
Score = 33.1 bits (72), Expect = 0.17
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = +3
Query: 324 TSYLEVWPSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSL 479
TSYL P+ +SRRPS GT SC P +P+ +P P P + ++ L
Sbjct: 273 TSYLTFGPNPAFSSRRPSEGTA------SCKP-APAPTPAPAGAPGARQTPL 317
>12_02_0408 +
18659494-18660362,18660472-18660634,18660976-18661139,
18661253-18661511,18661605-18661712
Length = 520
Score = 32.3 bits (70), Expect = 0.30
Identities = 17/59 (28%), Positives = 24/59 (40%)
Frame = +3
Query: 321 PTSYLEVWPSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATG 497
P+S + + + +AG + CSP P P PQ P GRS A + G
Sbjct: 113 PSSLFDPFAGFCLFDATAAAGADSDGWDVRCSPPPPPPPPPPQAPPARGRSKAARRKGG 171
>11_01_0300 +
2253957-2254245,2254783-2254850,2254967-2255098,
2255811-2255969,2256124-2256489
Length = 337
Score = 31.1 bits (67), Expect = 0.69
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +3
Query: 390 DTSKQLSCSPGSPSTSPKPQTFP--DSGRSSLADKATGEMKSVGWTSL-XDADETNGIRR 560
+ +K+ SP SPSTSP P P SG A AT M S+G + +A NG++
Sbjct: 35 EAAKEYQSSPSSPSTSPTPSPPPVAASGHGGEA-AATPTMWSLGGEKMPSEAAGDNGMQM 93
Query: 561 GAER 572
R
Sbjct: 94 SGHR 97
>04_04_0054 + 22400278-22400420,22400545-22401037
Length = 211
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +3
Query: 384 TTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKSVGWTSLXDADETNGIRRG 563
TT K S S PS+S Q + SS A++ ++ GW++ A +T G+ R
Sbjct: 91 TTVRRKTASSSSPPPSSSMTDQETSPTTMSSEAERQRRLQEAAGWSASRRAPDTAGLGRP 150
Query: 564 AER 572
++
Sbjct: 151 VKK 153
>03_01_0299 - 2323945-2324422,2324542-2324671,2324763-2324898
Length = 247
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Frame = +1
Query: 205 RWSRSIRCIPRQA---------RRFQRCSRQHRPGAQLLEHHR*QEQFQHRTWKSGL 348
RWS RC+P + F++ R AQLL ++ Q+Q QHR + L
Sbjct: 89 RWSAIARCLPGRTDNEIKNYWRTHFKKARPSRRARAQLLHQYQLQQQQQHRQYLHSL 145
>01_03_0050 +
11959421-11959736,11959892-11959960,11960641-11960979,
11961090-11961152,11962472-11962962,11963773-11964441
Length = 648
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +3
Query: 348 SSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKSVG 515
S L S+ S K S SP + + T PD G+ ++ +TG+ + G
Sbjct: 539 SGLTQSKEASKTPATKKKTESTSPAAKKLKIEETTAPDEGKKAVKTHSTGKKRKAG 594
>09_04_0384 - 17153064-17154233
Length = 389
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +3
Query: 330 YLEVWPSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKS 509
++E W + RR + +++ S S S S SP P++ P + DK +K
Sbjct: 234 WIEFWSDAASDRRRRVSSSSEASTASSSSSSSGCPSPPPRSTP-LWVDNYLDKLGSVLKK 292
Query: 510 VGW 518
GW
Sbjct: 293 GGW 295
>03_05_0781 +
27654764-27655429,27655902-27656004,27656535-27656590,
27656895-27657059,27657078-27657083,27657657-27657770,
27658170-27658262
Length = 400
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 378 AGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLAD 485
A DT++++S SP + PKP+ D+ + SL D
Sbjct: 58 ASHPDTARRVSVSPAAVEPPPKPRALLDAIKRSLLD 93
>02_05_1309 + 35627549-35627679,35628377-35629361
Length = 371
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/72 (31%), Positives = 35/72 (48%)
Frame = +2
Query: 302 IADKSSSNIVLGSLAFLAGGLKETVGGHHGHVEAAQLLSRFAVDFAKAADISGFG*VLAG 481
+A++ + +G +A LAG L++ G GH +AA AVD A A VL G
Sbjct: 200 LAEEPLDGLAVGLVAELAGELEDAGGADDGHADAAAA----AVDLAVA--------VLGG 247
Query: 482 RQSHGRDEVSGL 517
R ++G G+
Sbjct: 248 RLANGEGGAIGV 259
>09_04_0038 -
13996505-13996836,13997047-13997077,13997307-13997420,
13997546-13997686,13997787-13997851,13997943-13998039,
13998096-13998257,13998360-13998473,14001263-14001311,
14001967-14002047,14003504-14003561,14003671-14004031,
14004129-14004213,14004320-14004591,14004712-14004914,
14005419-14005494
Length = 746
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -3
Query: 432 STANLESN*AASTCPWCPPTVSLRPPARKARLPST 328
S++N++SN S+ P P SL PPA+ L +T
Sbjct: 290 SSSNVDSNVTKSSGPLVVPPTSLPPPAQPETLATT 324
>07_01_0370 +
2749353-2749786,2749949-2750346,2750435-2750519,
2751200-2751314,2751538-2751591
Length = 361
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +3
Query: 423 SPSTSPKPQTFPDSGRSSLADKATGEMKS-VGWTSLXDAD 539
SP+ PKP+ F SG D S +GWT D D
Sbjct: 72 SPTLPPKPRAFSSSGSLGRRDGGAPRGGSFLGWTKTVDLD 111
>04_04_1125 + 31085106-31085714
Length = 202
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/69 (27%), Positives = 24/69 (34%)
Frame = -3
Query: 519 SNPLTSSLPWLCLPARTYPNPEMSAALAKSTANLESN*AASTCPWCPPTVSLRPPARKAR 340
+ P T PW PA P P + A A P PPT + P +
Sbjct: 54 ATPTTPPTPWTPPPAT--PTPPTPTPWTPTPATPPPTPATPATPTTPPTPAPAPSTPTGK 111
Query: 339 LPSTMLELL 313
P L+LL
Sbjct: 112 CPVDTLKLL 120
>01_04_0056 + 15476868-15476896,15477581-15478259
Length = 235
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +3
Query: 336 EVWPSSLVASRRPSAGTTD----TSKQLSCSPGSPSTSPKPQTFPDSGR 470
+ P+ L++ RP+A T T+ + +P + + +PKP T PD R
Sbjct: 50 DTMPNCLISLARPAAPTLPHSHLTNPRHPATPTATAATPKPNTPPDPTR 98
>12_02_0858 +
23740589-23743233,23743362-23743503,23744778-23744990,
23745083-23745190,23745378-23745587,23745881-23746055,
23746197-23746264
Length = 1186
Score = 27.5 bits (58), Expect = 8.5
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Frame = +3
Query: 327 SYLEVWPSSLVASRRPSAGTTDTSKQLSCSPGSPSTS-----PKPQTFPDSGRSSLADKA 491
+Y E+ +S R+ S + S + CSPGS S+S P+P G SSL
Sbjct: 550 TYNELPRTSSFLRRQSSESSQLNSASVKCSPGSGSSSTTMGPPRPFNTVSGGASSLLGSP 609
Query: 492 TGEM 503
M
Sbjct: 610 LSSM 613
>06_01_0514 - 3706178-3706787,3709334-3709441,3710425-3710810
Length = 367
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +2
Query: 197 NTGGGLDP-FDVFRDRHE--GSSAVLVSTGQEHSYLNIIADKSSSNIVLGSLAFLAGG 361
+ G +DP FD F D + G V +H+ N++AD +S N G A + GG
Sbjct: 14 DAGAVVDPTFDFFIDHNNFLGMPPPPVQQADDHAMNNVVAD-ASMNYFYGGGAMVFGG 70
>05_05_0195 +
23142830-23143714,23144288-23144314,23144657-23144866,
23144976-23145242,23146290-23146376,23146495-23146553,
23147166-23147768,23148063-23148192,23148570-23149100,
23149636-23149743,23149911-23150456,23150957-23151079,
23151494-23151709
Length = 1263
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/35 (51%), Positives = 20/35 (57%)
Frame = -2
Query: 577 AVRSAPLRIPLVSSASXRDVQPTDFISPVALSASE 473
A SA LR PL SSA+ + PTD SP SA E
Sbjct: 577 AAASAILR-PLPSSAADGEAPPTDSSSPSPPSAEE 610
>04_04_0824 -
28399144-28399385,28400193-28400312,28400422-28400453,
28400531-28400625,28400713-28400786,28400883-28401018,
28401096-28401333,28401508-28401555,28401593-28401780,
28401862-28401983,28402061-28402226,28402321-28402443,
28403068-28403139,28403244-28403351,28404212-28404328,
28404458-28404596,28404702-28404808,28404904-28405013,
28405141-28405274,28405348-28405497,28405571-28405791,
28405868-28406677,28410261-28410473
Length = 1254
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 365 KETVGGHHGHVEAAQLLSRFAVDFAKAADISGFG*VLAGRQSHGRDE-VSGLDI 523
++++GG G + + L R + FA AD+ LAGRQ+ E + LDI
Sbjct: 404 EDSLGGGQG-TQRRERLFRVVIKFAARADLHHLAMFLAGRQADAPQEALQVLDI 456
>04_03_1002 -
21617339-21617362,21618476-21618565,21618755-21619432,
21619536-21619772,21619849-21619896,21619995-21620045,
21620301-21620426,21620557-21620697,21621165-21621401,
21622467-21622571,21622812-21622982,21623306-21623380,
21623754-21623936,21624151-21624297,21624365-21624472,
21624605-21624709,21625109-21625213,21625322-21625381,
21625512-21625579,21625876-21625954,21626208-21626267,
21626445-21626498,21626834-21626886,21627405-21627494,
21628265-21628362,21628464-21628852
Length = 1193
Score = 27.5 bits (58), Expect = 8.5
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Frame = +3
Query: 345 PSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGR----SSLADKATGEMKSV 512
PSS ++ TT +S P +PS + T P SGR SS + +A G V
Sbjct: 49 PSSSSSAAGGGRPTTPSSSSAGGRPTTPSAAFARSTTPSSGRPTTPSSASSRAAGRAPPV 108
Query: 513 GWTSLXDADE 542
+A E
Sbjct: 109 AAVDAANAKE 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,393,294
Number of Sequences: 37544
Number of extensions: 275846
Number of successful extensions: 1431
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1427
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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