Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13a01
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-12|CAB00066.1|  368|Caenorhabditis elegans Hypothetical p...    30   1.1  
AL033508-5|CAA22057.1|  368|Caenorhabditis elegans Hypothetical ...    30   1.1  
AC024876-6|AAS80337.1|  181|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p...    28   5.7  
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p...    28   5.7  
AL110484-7|CAB54398.1|  286|Caenorhabditis elegans Hypothetical ...    28   5.7  
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane...    28   5.7  
U58764-3|AAB00725.1|  122|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical p...    27   7.5  
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a...    27   7.5  
AC024776-1|AAK68468.1|  338|Caenorhabditis elegans Hypothetical ...    27   7.5  
Z81506-2|CAB04129.1|  257|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z70287-6|CAH04747.1|  443|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical ...    27   10.0 

>Z75714-12|CAB00066.1|  368|Caenorhabditis elegans Hypothetical
           protein Y106G6G.1 protein.
          Length = 368

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 547 LVSSASXRDVQPTDFISPVALSASEDLPESGNVCGFGEV 431
           + S+ +     P + I PVA  +S  LPE+G V G  E+
Sbjct: 298 MTSNVNGEVTAPEEKIDPVARDSSHALPENGEVTGNSEI 336


>AL033508-5|CAA22057.1|  368|Caenorhabditis elegans Hypothetical
           protein Y106G6G.1 protein.
          Length = 368

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 547 LVSSASXRDVQPTDFISPVALSASEDLPESGNVCGFGEV 431
           + S+ +     P + I PVA  +S  LPE+G V G  E+
Sbjct: 298 MTSNVNGEVTAPEEKIDPVARDSSHALPENGEVTGNSEI 336


>AC024876-6|AAS80337.1|  181|Caenorhabditis elegans Hypothetical
           protein Y94H6A.10 protein.
          Length = 181

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 417 PGSPSTSPKP-QTFPDSGRSSLADKATGEMKSVGW 518
           P S S S  P +  PDS RS++  K T +M+  GW
Sbjct: 28  PESSSKSKSPLKDGPDSQRSNIRRKLTTQMQKQGW 62


>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
            K08E5.3b protein.
          Length = 3183

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +3

Query: 372  PSAGTTDTSKQL--SCSPGSPSTSPKPQTFPDSGRSSLADKAT 494
            P+A  TDT +     C  G    SP PQTFP      L ++ T
Sbjct: 1087 PNALCTDTEEGYVCRCKSGFVDYSPNPQTFPGMVCKELVNECT 1129


>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
            K08E5.3a protein.
          Length = 3767

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +3

Query: 372  PSAGTTDTSKQL--SCSPGSPSTSPKPQTFPDSGRSSLADKAT 494
            P+A  TDT +     C  G    SP PQTFP      L ++ T
Sbjct: 1671 PNALCTDTEEGYVCRCKSGFVDYSPNPQTFPGMVCKELVNECT 1713


>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
            protein K08E5.3b protein.
          Length = 3183

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +3

Query: 372  PSAGTTDTSKQL--SCSPGSPSTSPKPQTFPDSGRSSLADKAT 494
            P+A  TDT +     C  G    SP PQTFP      L ++ T
Sbjct: 1087 PNALCTDTEEGYVCRCKSGFVDYSPNPQTFPGMVCKELVNECT 1129


>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
            protein K08E5.3a protein.
          Length = 3767

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +3

Query: 372  PSAGTTDTSKQL--SCSPGSPSTSPKPQTFPDSGRSSLADKAT 494
            P+A  TDT +     C  G    SP PQTFP      L ++ T
Sbjct: 1671 PNALCTDTEEGYVCRCKSGFVDYSPNPQTFPGMVCKELVNECT 1713


>AL110484-7|CAB54398.1|  286|Caenorhabditis elegans Hypothetical
           protein Y38E10A.7 protein.
          Length = 286

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = -2

Query: 310 VSDDVQVAVLLAGADENSAGTFVPVAEYIE---WIETTAGIT 194
           +S   +  V+L     NSAGTF P A Y     W E T   T
Sbjct: 59  LSPTTRTPVILVHGTTNSAGTFAPQAAYFRANGWSEETVYAT 100


>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
            adhesion receptorMUA-3 precursor protein.
          Length = 3767

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +3

Query: 372  PSAGTTDTSKQL--SCSPGSPSTSPKPQTFPDSGRSSLADKAT 494
            P+A  TDT +     C  G    SP PQTFP      L ++ T
Sbjct: 1671 PNALCTDTEEGYVCRCKSGFVDYSPNPQTFPGMVCKELVNECT 1713


>U58764-3|AAB00725.1|  122|Caenorhabditis elegans Hypothetical
           protein M03E7.2 protein.
          Length = 122

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 251 SSAVLVSTGQEHSYLNIIADKSSSNIVLGSLAFLAGGLKETVGG 382
           SS + +S+    SY + + D   S++ LGS+    GG+    GG
Sbjct: 12  SSLIAISSALPASYSSSLNDPLLSSLGLGSMGMGMGGMNGMYGG 55


>U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical
            protein R11G1.1 protein.
          Length = 1656

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 384  TTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADK 488
            T +TS+     P  P T  KP++   S +SS + K
Sbjct: 1212 TAETSEDSEVKPYQPQTPKKPESRKSSAKSSASSK 1246


>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 192 protein.
          Length = 2957

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 324  TSYLEVWPSSLVASRRPSAGTTDTSKQLSCSPGSPSTS 437
            +S   V   + +A+   +A T  TSKQ S S  +PSTS
Sbjct: 2838 SSTANVASMAAMAAAAQAASTPTTSKQASASTSTPSTS 2875


>AC024776-1|AAK68468.1|  338|Caenorhabditis elegans Hypothetical
           protein Y41D4B.18 protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 372 PSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKSVGWTSL 527
           P+A +  TS Q   S  S ++SP P   P + R + A ++T        T L
Sbjct: 266 PTATSPKTSSQPVSSSTSSTSSPAPTNPPTTSRPTTASQSTASQNVETTTKL 317


>Z81506-2|CAB04129.1|  257|Caenorhabditis elegans Hypothetical
           protein F16H6.3 protein.
          Length = 257

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +3

Query: 393 TSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKSVGWT 521
           T+ Q SCS    STS      PDS  S  A  A G   ++ +T
Sbjct: 200 TTTQASCSSSGGSTSTCTSYNPDSSSSCAAWAANGFCININYT 242


>Z70287-6|CAH04747.1|  443|Caenorhabditis elegans Hypothetical
           protein R09E10.9 protein.
          Length = 443

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +3

Query: 324 TSYLEVWPSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGR 470
           + Y+E  P  L   + P     D    +S SP   ST P P T P   +
Sbjct: 309 SDYVEAHPPPLEMFKAPPKIEKDGDDGVSPSPVPVSTPPVPSTIPSPSK 357


>AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical
           protein Y51B11A.1 protein.
          Length = 1079

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 345 PSSLVASRRPSAGTTDTSKQLSCSPGSPSTS-PKPQTFPDSGRSSLADKAT 494
           PS+LV S  P++ +T   +  + +P + ST  P   T P    ++ A + T
Sbjct: 57  PSTLVLSSTPTSSSTPIKETTTTAPETTSTEPPSSSTTPVQTTTTTAPETT 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,379,414
Number of Sequences: 27780
Number of extensions: 201639
Number of successful extensions: 875
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)