Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13a01
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.73 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   1.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   3.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   9.0  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 0.73
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -3

Query: 489 LCLPARTYPNPEMSAALAKSTANLESN*AASTC--PWC-PPTVSLRPPA 352
           L L AR  PN  +  +LA   ++L S    S C  P   P T    PP+
Sbjct: 267 LLLKARLNPNSSLQPSLASHHSHLSSALGRSACHSPGVYPSTAGFLPPS 315


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = -2

Query: 490 ALSASEDLPESGNVCGFGEVDGEPGEQLSCFDVSVVPADGLLEATSEEGQTSKYDV 323
           +++ +E L E  N C + ++   PGE  S   ++V     +    S   +T ++DV
Sbjct: 7   SMTQTELLQELTNDCRYDKMTRPPGEINSINPINVYTKAYIYTIKSNMAKTLQFDV 62


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 390 DTSKQLSCSPGSPSTSPKPQTFP 458
           D+ + L+ S  SPS SP+P   P
Sbjct: 870 DSQQPLNLSKKSPSPSPRPLVGP 892


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +3

Query: 333 LEVWPSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGR 470
           +EV P S +    PS        Q+SC   SP     P +  +SGR
Sbjct: 365 IEVIPLSAIPE--PSKNPAMGHWQMSCVACSPPPRQTPPSRKESGR 408


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
 Frame = -2

Query: 436 EVDGEPGEQLSCFDVSVV---PADGLLEATSEEGQTSKYD 326
           E D + G+     DV      PA+G+L       +T KYD
Sbjct: 391 EDDDDDGDDDDDDDVEAANGKPAEGMLTDVFHVQETDKYD 430


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 579 AQSVLHPFGYHWSRQHQXGMSNPLT 505
           +Q  +HP     ++QHQ  +++PL+
Sbjct: 217 SQPGMHPRQQQQAQQHQGVVTSPLS 241


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,967
Number of Sequences: 438
Number of extensions: 2167
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)