Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12p19
(679 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC019321-1|AAH19321.1| 221|Homo sapiens vacuolar protein sortin... 272 1e-72
BC006485-1|AAH06485.1| 221|Homo sapiens vacuolar protein sortin... 272 1e-72
AF316887-1|AAK00314.1| 221|Homo sapiens vacuolar sorting protei... 272 1e-72
AF182844-1|AAF00499.1| 221|Homo sapiens VPS28 protein protein. 272 1e-72
BC050713-1|AAH50713.1| 233|Homo sapiens vacuolar protein sortin... 219 1e-56
BC069099-1|AAH69099.1| 98|Homo sapiens keratin associated prot... 33 1.2
AK131313-1|BAD18477.1| 244|Homo sapiens protein ( Homo sapiens ... 33 1.2
Z26653-1|CAA81394.1| 3110|Homo sapiens laminin M chain (merosin)... 31 3.8
U66796-1|AAB18388.1| 3110|Homo sapiens laminin alpha 2 chain pro... 31 3.8
M59832-1|AAA63215.1| 1130|Homo sapiens merosin protein. 31 3.8
AL669984-2|CAI16682.1| 3122|Homo sapiens laminin, alpha 2 (meros... 31 3.8
AL590613-1|CAH70771.1| 3122|Homo sapiens laminin, alpha 2 (meros... 31 3.8
AL583853-1|CAH70492.1| 3122|Homo sapiens laminin, alpha 2 (meros... 31 3.8
AL513527-1|CAI15185.1| 3122|Homo sapiens laminin, alpha 2 (meros... 31 3.8
AL445439-1|CAH72952.1| 3122|Homo sapiens laminin, alpha 2 (meros... 31 3.8
AL356124-1|CAI22470.1| 3122|Homo sapiens laminin, alpha 2 (meros... 31 3.8
AB208922-1|BAD92159.1| 1853|Homo sapiens laminin alpha 2 subunit... 31 3.8
BC034582-1|AAH34582.1| 98|Homo sapiens keratin associated prot... 31 5.0
AJ406932-1|CAC27571.1| 98|Homo sapiens keratin associated prot... 31 5.0
AK057946-1|BAB71619.1| 517|Homo sapiens protein ( Homo sapiens ... 30 6.6
>BC019321-1|AAH19321.1| 221|Homo sapiens vacuolar protein sorting
28 homolog (S. cerevisiae) protein.
Length = 221
Score = 272 bits (666), Expect = 1e-72
Identities = 126/188 (67%), Positives = 156/188 (82%)
Frame = -2
Query: 678 REKHDNMAELYAVVCTLQHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADEFPNI 499
REK+DNMAEL+AVV T+Q LEKAY++DCV EYTAACSRLLVQYK AF+QVQ E +I
Sbjct: 33 REKYDNMAELFAVVKTMQALEKAYIKDCVSPSEYTAACSRLLVQYKAAFRQVQGSEISSI 92
Query: 498 EAFVAKYRLDCPAALERIRENKPNLIKDDKGNTNKYIAEIVSLFITLMDKLRLEFRAMDM 319
+ F K+RLDCP A+ERI+E++P IKDDKGN N+ IA++VSLFIT+MDKLRLE RAMD
Sbjct: 93 DEFCRKFRLDCPLAMERIKEDRPITIKDDKGNLNRCIADVVSLFITVMDKLRLEIRAMDE 152
Query: 318 IQPELRDLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSY 139
IQP+LR+L +TM R+S LP DFEG+ V +WL LS MSASDEL ++QVRQ++FDLE++Y
Sbjct: 153 IQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQVRQMLFDLESAY 212
Query: 138 GAFNKFLH 115
AFN+FLH
Sbjct: 213 NAFNRFLH 220
>BC006485-1|AAH06485.1| 221|Homo sapiens vacuolar protein sorting
28 homolog (S. cerevisiae) protein.
Length = 221
Score = 272 bits (666), Expect = 1e-72
Identities = 126/188 (67%), Positives = 156/188 (82%)
Frame = -2
Query: 678 REKHDNMAELYAVVCTLQHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADEFPNI 499
REK+DNMAEL+AVV T+Q LEKAY++DCV EYTAACSRLLVQYK AF+QVQ E +I
Sbjct: 33 REKYDNMAELFAVVKTMQALEKAYIKDCVSPSEYTAACSRLLVQYKAAFRQVQGSEISSI 92
Query: 498 EAFVAKYRLDCPAALERIRENKPNLIKDDKGNTNKYIAEIVSLFITLMDKLRLEFRAMDM 319
+ F K+RLDCP A+ERI+E++P IKDDKGN N+ IA++VSLFIT+MDKLRLE RAMD
Sbjct: 93 DEFCRKFRLDCPLAMERIKEDRPITIKDDKGNLNRCIADVVSLFITVMDKLRLEIRAMDE 152
Query: 318 IQPELRDLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSY 139
IQP+LR+L +TM R+S LP DFEG+ V +WL LS MSASDEL ++QVRQ++FDLE++Y
Sbjct: 153 IQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQVRQMLFDLESAY 212
Query: 138 GAFNKFLH 115
AFN+FLH
Sbjct: 213 NAFNRFLH 220
>AF316887-1|AAK00314.1| 221|Homo sapiens vacuolar sorting protein
28 protein.
Length = 221
Score = 272 bits (666), Expect = 1e-72
Identities = 126/188 (67%), Positives = 156/188 (82%)
Frame = -2
Query: 678 REKHDNMAELYAVVCTLQHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADEFPNI 499
REK+DNMAEL+AVV T+Q LEKAY++DCV EYTAACSRLLVQYK AF+QVQ E +I
Sbjct: 33 REKYDNMAELFAVVKTMQALEKAYIKDCVSPSEYTAACSRLLVQYKAAFRQVQGSEISSI 92
Query: 498 EAFVAKYRLDCPAALERIRENKPNLIKDDKGNTNKYIAEIVSLFITLMDKLRLEFRAMDM 319
+ F K+RLDCP A+ERI+E++P IKDDKGN N+ IA++VSLFIT+MDKLRLE RAMD
Sbjct: 93 DEFCRKFRLDCPLAMERIKEDRPITIKDDKGNLNRCIADVVSLFITVMDKLRLEIRAMDE 152
Query: 318 IQPELRDLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSY 139
IQP+LR+L +TM R+S LP DFEG+ V +WL LS MSASDEL ++QVRQ++FDLE++Y
Sbjct: 153 IQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQVRQMLFDLESAY 212
Query: 138 GAFNKFLH 115
AFN+FLH
Sbjct: 213 NAFNRFLH 220
>AF182844-1|AAF00499.1| 221|Homo sapiens VPS28 protein protein.
Length = 221
Score = 272 bits (666), Expect = 1e-72
Identities = 126/188 (67%), Positives = 156/188 (82%)
Frame = -2
Query: 678 REKHDNMAELYAVVCTLQHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADEFPNI 499
REK+DNMAEL+AVV T+Q LEKAY++DCV EYTAACSRLLVQYK AF+QVQ E +I
Sbjct: 33 REKYDNMAELFAVVKTMQALEKAYIKDCVSPSEYTAACSRLLVQYKAAFRQVQGSEISSI 92
Query: 498 EAFVAKYRLDCPAALERIRENKPNLIKDDKGNTNKYIAEIVSLFITLMDKLRLEFRAMDM 319
+ F K+RLDCP A+ERI+E++P IKDDKGN N+ IA++VSLFIT+MDKLRLE RAMD
Sbjct: 93 DEFCRKFRLDCPLAMERIKEDRPITIKDDKGNLNRCIADVVSLFITVMDKLRLEIRAMDE 152
Query: 318 IQPELRDLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSY 139
IQP+LR+L +TM R+S LP DFEG+ V +WL LS MSASDEL ++QVRQ++FDLE++Y
Sbjct: 153 IQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQVRQMLFDLESAY 212
Query: 138 GAFNKFLH 115
AFN+FLH
Sbjct: 213 NAFNRFLH 220
>BC050713-1|AAH50713.1| 233|Homo sapiens vacuolar protein sorting
28 homolog (S. cerevisiae) protein.
Length = 233
Score = 219 bits (534), Expect = 1e-56
Identities = 101/151 (66%), Positives = 124/151 (82%)
Frame = -2
Query: 678 REKHDNMAELYAVVCTLQHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADEFPNI 499
REK+DNMAEL+AVV T+Q LEKAY++DCV EYTAACSRLLVQYK AF+QVQ E +I
Sbjct: 33 REKYDNMAELFAVVKTMQALEKAYIKDCVSPSEYTAACSRLLVQYKAAFRQVQGSEISSI 92
Query: 498 EAFVAKYRLDCPAALERIRENKPNLIKDDKGNTNKYIAEIVSLFITLMDKLRLEFRAMDM 319
+ F K+RLDCP A+ERI+E++P IKDDKGN N+ IA++VSLFIT+MDKLRLE RAMD
Sbjct: 93 DEFCRKFRLDCPLAMERIKEDRPITIKDDKGNLNRCIADVVSLFITVMDKLRLEIRAMDE 152
Query: 318 IQPELRDLRDTMDRLSMLPDDFEGKLKVQEW 226
IQP+LR+L +TM R+S LP DFEG+ V +W
Sbjct: 153 IQPDLRELMETMHRMSHLPPDFEGRQTVSQW 183
>BC069099-1|AAH69099.1| 98|Homo sapiens keratin associated protein
3-3 protein.
Length = 98
Score = 32.7 bits (71), Expect = 1.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 573 PCIPVLAHNHACMPSPGAEGYRRQHRAQPCYHAFL 677
PC+P ++C P+PG E QPCY L
Sbjct: 60 PCVPTCFLLNSCQPTPGLETLNLTTFTQPCYEPCL 94
>AK131313-1|BAD18477.1| 244|Homo sapiens protein ( Homo sapiens
cDNA FLJ16301 fis, clone PLACE7000333. ).
Length = 244
Score = 32.7 bits (71), Expect = 1.2
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = -2
Query: 435 KPNLIKDDKGNTNKYIAEIVSLFITLMDKLRLEFRAMDMIQPELRDLRDTMDRLSMLPDD 256
KP IK DKG+ + +T+++ RA I+ LRDL+ +D +++ D
Sbjct: 85 KPTKIKGDKGHYIMVKGSMQQEELTILNIYAPNTRAPRFIKQVLRDLQRDLDSHTIIMGD 144
Query: 255 FEGKLKVQE 229
F +L + E
Sbjct: 145 FNTELSILE 153
>Z26653-1|CAA81394.1| 3110|Homo sapiens laminin M chain (merosin)
protein.
Length = 3110
Score = 31.1 bits (67), Expect = 3.8
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = -2
Query: 306 LRDLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSYGAFN 127
LR L DT+ +LS +P+D KL+ + + + +A D L AQ+ +L +L+ +N
Sbjct: 2013 LRTLNDTLGKLSAIPNDTAAKLQAVKDKARQANDTAKDVL--AQITELHQNLDGLKKNYN 2070
Query: 126 K 124
K
Sbjct: 2071 K 2071
>U66796-1|AAB18388.1| 3110|Homo sapiens laminin alpha 2 chain protein.
Length = 3110
Score = 31.1 bits (67), Expect = 3.8
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = -2
Query: 306 LRDLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSYGAFN 127
LR L DT+ +LS +P+D KL+ + + + +A D L AQ+ +L +L+ +N
Sbjct: 2013 LRTLNDTLGKLSAIPNDTAAKLQAVKDKARQANDTAKDVL--AQITELHQNLDGLKKNYN 2070
Query: 126 K 124
K
Sbjct: 2071 K 2071
>M59832-1|AAA63215.1| 1130|Homo sapiens merosin protein.
Length = 1130
Score = 31.1 bits (67), Expect = 3.8
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = -2
Query: 306 LRDLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSYGAFN 127
LR L DT+ +LS +P+D KL+ + + + +A D L AQ+ +L +L+ +N
Sbjct: 33 LRTLNDTLGKLSAIPNDTAAKLQAVKDKARQANDTAKDVL--AQITELHQNLDGLKKNYN 90
Query: 126 K 124
K
Sbjct: 91 K 91
>AL669984-2|CAI16682.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
congenital muscular dystrophy) protein.
Length = 3122
Score = 31.1 bits (67), Expect = 3.8
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = -2
Query: 306 LRDLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSYGAFN 127
LR L DT+ +LS +P+D KL+ + + + +A D L AQ+ +L +L+ +N
Sbjct: 2013 LRTLNDTLGKLSAIPNDTAAKLQAVKDKARQANDTAKDVL--AQITELHQNLDGLKKNYN 2070
Query: 126 K 124
K
Sbjct: 2071 K 2071
>AL590613-1|CAH70771.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
congenital muscular dystrophy) protein.
Length = 3122
Score = 31.1 bits (67), Expect = 3.8
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = -2
Query: 306 LRDLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSYGAFN 127
LR L DT+ +LS +P+D KL+ + + + +A D L AQ+ +L +L+ +N
Sbjct: 2013 LRTLNDTLGKLSAIPNDTAAKLQAVKDKARQANDTAKDVL--AQITELHQNLDGLKKNYN 2070
Query: 126 K 124
K
Sbjct: 2071 K 2071
>AL583853-1|CAH70492.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
congenital muscular dystrophy) protein.
Length = 3122
Score = 31.1 bits (67), Expect = 3.8
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = -2
Query: 306 LRDLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSYGAFN 127
LR L DT+ +LS +P+D KL+ + + + +A D L AQ+ +L +L+ +N
Sbjct: 2013 LRTLNDTLGKLSAIPNDTAAKLQAVKDKARQANDTAKDVL--AQITELHQNLDGLKKNYN 2070
Query: 126 K 124
K
Sbjct: 2071 K 2071
>AL513527-1|CAI15185.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
congenital muscular dystrophy) protein.
Length = 3122
Score = 31.1 bits (67), Expect = 3.8
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = -2
Query: 306 LRDLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSYGAFN 127
LR L DT+ +LS +P+D KL+ + + + +A D L AQ+ +L +L+ +N
Sbjct: 2013 LRTLNDTLGKLSAIPNDTAAKLQAVKDKARQANDTAKDVL--AQITELHQNLDGLKKNYN 2070
Query: 126 K 124
K
Sbjct: 2071 K 2071
>AL445439-1|CAH72952.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
congenital muscular dystrophy) protein.
Length = 3122
Score = 31.1 bits (67), Expect = 3.8
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = -2
Query: 306 LRDLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSYGAFN 127
LR L DT+ +LS +P+D KL+ + + + +A D L AQ+ +L +L+ +N
Sbjct: 2013 LRTLNDTLGKLSAIPNDTAAKLQAVKDKARQANDTAKDVL--AQITELHQNLDGLKKNYN 2070
Query: 126 K 124
K
Sbjct: 2071 K 2071
>AL356124-1|CAI22470.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
congenital muscular dystrophy) protein.
Length = 3122
Score = 31.1 bits (67), Expect = 3.8
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = -2
Query: 306 LRDLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSYGAFN 127
LR L DT+ +LS +P+D KL+ + + + +A D L AQ+ +L +L+ +N
Sbjct: 2013 LRTLNDTLGKLSAIPNDTAAKLQAVKDKARQANDTAKDVL--AQITELHQNLDGLKKNYN 2070
Query: 126 K 124
K
Sbjct: 2071 K 2071
>AB208922-1|BAD92159.1| 1853|Homo sapiens laminin alpha 2 subunit
precursor variant protein.
Length = 1853
Score = 31.1 bits (67), Expect = 3.8
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = -2
Query: 306 LRDLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSYGAFN 127
LR L DT+ +LS +P+D KL+ + + + +A D L AQ+ +L +L+ +N
Sbjct: 748 LRTLNDTLGKLSAIPNDTAAKLQAVKDKARQANDTAKDVL--AQITELHQNLDGLKKNYN 805
Query: 126 K 124
K
Sbjct: 806 K 806
>BC034582-1|AAH34582.1| 98|Homo sapiens keratin associated protein
3-2 protein.
Length = 98
Score = 30.7 bits (66), Expect = 5.0
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Frame = +3
Query: 534 KPLCTARGDDCMPPC------IPVLAHNHACMPSPGAEGYRRQHRAQPC 662
+P+C D+C PPC +P ++C P+PG E QPC
Sbjct: 44 EPICC---DNCPPPCHIPQPCVPTCFLLNSCQPTPGLETLNLTTFTQPC 89
>AJ406932-1|CAC27571.1| 98|Homo sapiens keratin associated protein
3.2 protein.
Length = 98
Score = 30.7 bits (66), Expect = 5.0
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Frame = +3
Query: 534 KPLCTARGDDCMPPC------IPVLAHNHACMPSPGAEGYRRQHRAQPC 662
+P+C D+C PPC +P ++C P+PG E QPC
Sbjct: 44 EPICC---DNCPPPCHIPQPCVPTCFLLNSCQPTPGLETLNLTTFTQPC 89
>AK057946-1|BAB71619.1| 517|Homo sapiens protein ( Homo sapiens
cDNA FLJ25217 fis, clone REC08938, highly similar to
Oryctolagus cuniculus Na+/glucose cotransporter-related
protein ).
Length = 517
Score = 30.3 bits (65), Expect = 6.6
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 452 SKAAGQSNLYLATKASILGNS-SACTCLKATLYC 550
S + +S+ YL+T S G S SACTCL YC
Sbjct: 16 STSPQRSSPYLSTFRSATGASGSACTCLSCPCYC 49
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,811,822
Number of Sequences: 237096
Number of extensions: 2048909
Number of successful extensions: 5759
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 5455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5759
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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