Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12p14
         (429 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   0.70 
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   6.6  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 0.70
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -2

Query: 206 LIYIQSIFIFFTEKLHFHCACLSIILSILFWVQLHFSY 93
           L+ +  I+ F+   L F CA +   + +LF + +++ Y
Sbjct: 252 LLLLVCIYYFYYMHLLFCCAFIIFTMHLLFLLCIYYFY 289



 Score = 23.0 bits (47), Expect = 1.2
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -3

Query: 202 YIYNQFLYFLQRNYTFTVHVYL*F*AFYFGCNYILV 95
           Y Y   L F      FT+H+      +YF C  I++
Sbjct: 260 YFYYMHLLFCCAFIIFTMHLLFLLCIYYFYCALIIL 295



 Score = 22.2 bits (45), Expect = 2.2
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 181 YFLQRNYTFTVHVYL*F*AFYFGCNYILVT 92
           YF      FTVH+      ++F C +I+ T
Sbjct: 148 YFYCAFIIFTVHLLFLLCIYHFFCAFIIFT 177



 Score = 22.2 bits (45), Expect = 2.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 185 FIFFTEKLHFHCACLSIILSILFWVQLHF 99
           FI FT  L F CA +   + +LF + L +
Sbjct: 173 FIIFTMHLLFCCAFIFFNMHLLFLLCLDY 201



 Score = 20.6 bits (41), Expect = 6.6
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = -3

Query: 196 YNQFLYFLQRNYTFTVHVYL*F*AFYFGCNYILVTDLIVLVKV*FYLNISFRLFYIIYL 20
           +N  L FL     FT+H+      +YF   +I+ T  ++   V   L   +  +Y   L
Sbjct: 189 FNMHLLFLLCLDYFTLHLLFLPCIYYFYSAFIIFTIHLLFYCVLIILLCIYYFYYAFIL 247



 Score = 20.2 bits (40), Expect = 8.7
 Identities = 12/60 (20%), Positives = 22/60 (36%)
 Frame = -3

Query: 202 YIYNQFLYFLQRNYTFTVHVYL*F*AFYFGCNYILVTDLIVLVKV*FYLNISFRLFYIIY 23
           Y Y  F+ F           Y  +    F C +I+ T  ++ +   +Y   +  +   IY
Sbjct: 240 YFYYAFILFTVHLLLLVCIYYFYYMHLLFCCAFIIFTMHLLFLLCIYYFYCALIILLCIY 299


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 115 QNKMLKIIDRHAQ*KC 162
           QNK+LK+I ++   KC
Sbjct: 394 QNKILKVIRKNLVKKC 409


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,520
Number of Sequences: 336
Number of extensions: 1354
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9460170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)