Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12p14
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    28   0.53 
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    26   2.9  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    25   3.8  

>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 28.3 bits (60), Expect = 0.53
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
 Frame = -2

Query: 197 IQSIFIFFTEKLHFHCACLSIILSILF------WVQLHFSYRFNCSSKSIV 63
           I+ +FI++ + L +    +S+ILSI F      WV L +   F C   +I+
Sbjct: 455 IEIVFIWYAQILWYLVFIVSVILSIYFQLGSTYWVTLSYLCTFTCCIMTII 505


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = -2

Query: 119 FWVQLHFSYRFNC 81
           FW++L+F++RF C
Sbjct: 7   FWIRLYFTFRFFC 19


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 202 YIYNQFLYFLQRNYTFTVH 146
           ++YN F+Y  +R Y F  H
Sbjct: 181 FVYNDFMYEFERLYAFGFH 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,235,557
Number of Sequences: 5004
Number of extensions: 17702
Number of successful extensions: 33
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)