Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12p14
         (429 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0579 + 17481012-17481219,17481776-17481849,17482207-174822...    27   6.4  
03_05_0101 - 20803546-20803800,20803907-20804700,20804788-208050...    27   8.5  

>04_03_0579 +
          17481012-17481219,17481776-17481849,17482207-17482211,
          17482523-17482607,17484144-17484231,17484307-17484398,
          17484903-17485055
          Length = 234

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -3

Query: 61 YLNISFRLFYIIYLPE 14
          YLN+S+ L YI+YLP+
Sbjct: 26 YLNLSWNLRYIMYLPD 41


>03_05_0101 -
           20803546-20803800,20803907-20804700,20804788-20805042,
           20805143-20805263,20805716-20805768,20805979-20806239,
           20806734-20806784,20806900-20807148,20807257-20807479,
           20807737-20807910
          Length = 811

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 12/51 (23%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -2

Query: 233 FIIYF*KSKLIYIQSIFIFFTEKLHFHCACLSIILSILF-WVQLHFS-YRF 87
           F + F  ++ +Y+ ++   FT+  +   A  ++++ I+F W  +H   Y+F
Sbjct: 495 FFVVFMSTETVYLSAVLYKFTKGPYMPLAMSAVLMVIMFVWHYVHVKRYKF 545


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,611,663
Number of Sequences: 37544
Number of extensions: 79650
Number of successful extensions: 115
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)