Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12p14
         (429 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U31216-1|AAA87844.1|  906|Homo sapiens metabotropic glutamate re...    31   2.2  
U31215-1|AAA87843.1| 1194|Homo sapiens metabotropic glutamate re...    31   2.2  
L76631-1|AAB05338.1|  906|Homo sapiens metabotropic glutamate re...    31   2.2  
L76627-1|AAB05337.1| 1194|Homo sapiens metabotropic glutamate re...    31   2.2  
AL592423-3|CAH71182.1| 1194|Homo sapiens glutamate receptor, met...    31   2.2  
AL592423-2|CAH71181.1|  906|Homo sapiens glutamate receptor, met...    31   2.2  
AL096867-2|CAI20336.1| 1194|Homo sapiens glutamate receptor, met...    31   2.2  
AL096867-1|CAI20335.1|  906|Homo sapiens glutamate receptor, met...    31   2.2  
AL035698-3|CAI22469.1| 1194|Homo sapiens glutamate receptor, met...    31   2.2  
AL035698-2|CAI22468.1|  906|Homo sapiens glutamate receptor, met...    31   2.2  
AB208837-1|BAD92074.1|  901|Homo sapiens glutamate receptor, met...    31   2.2  

>U31216-1|AAA87844.1|  906|Homo sapiens metabotropic glutamate
           receptor 1 beta protein.
          Length = 906

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
 Frame = -3

Query: 226 FIFKSQN*YI-YNQFLYFLQRNYTFTVHVYL*F*AFYFGCNY-ILVTDLIVLVKV*FYLN 53
           + FK++N    +N+  Y     YT T  ++L F   YFG NY I+ T   V + V   L 
Sbjct: 770 YAFKTRNVPANFNEAKYIAFTMYT-TCIIWLAFVPIYFGSNYKIITTCFAVSLSVTVALG 828

Query: 52  ISF--RLFYIIYLPER 11
             F  +++ II  PER
Sbjct: 829 CMFTPKMYIIIAKPER 844


>U31215-1|AAA87843.1| 1194|Homo sapiens metabotropic glutamate
           receptor 1 alpha protein.
          Length = 1194

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
 Frame = -3

Query: 226 FIFKSQN*YI-YNQFLYFLQRNYTFTVHVYL*F*AFYFGCNY-ILVTDLIVLVKV*FYLN 53
           + FK++N    +N+  Y     YT T  ++L F   YFG NY I+ T   V + V   L 
Sbjct: 770 YAFKTRNVPANFNEAKYIAFTMYT-TCIIWLAFVPIYFGSNYKIITTCFAVSLSVTVALG 828

Query: 52  ISF--RLFYIIYLPER 11
             F  +++ II  PER
Sbjct: 829 CMFTPKMYIIIAKPER 844


>L76631-1|AAB05338.1|  906|Homo sapiens metabotropic glutamate
           receptor protein.
          Length = 906

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
 Frame = -3

Query: 226 FIFKSQN*YI-YNQFLYFLQRNYTFTVHVYL*F*AFYFGCNY-ILVTDLIVLVKV*FYLN 53
           + FK++N    +N+  Y     YT T  ++L F   YFG NY I+ T   V + V   L 
Sbjct: 770 YAFKTRNVPANFNEAKYIAFTMYT-TCIIWLAFVPIYFGSNYKIITTCFAVSLSVTVALG 828

Query: 52  ISF--RLFYIIYLPER 11
             F  +++ II  PER
Sbjct: 829 CMFTPKMYIIIAKPER 844


>L76627-1|AAB05337.1| 1194|Homo sapiens metabotropic glutamate
           receptor 1 alpha protein.
          Length = 1194

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
 Frame = -3

Query: 226 FIFKSQN*YI-YNQFLYFLQRNYTFTVHVYL*F*AFYFGCNY-ILVTDLIVLVKV*FYLN 53
           + FK++N    +N+  Y     YT T  ++L F   YFG NY I+ T   V + V   L 
Sbjct: 770 YAFKTRNVPANFNEAKYIAFTMYT-TCIIWLAFVPIYFGSNYKIITTCFAVSLSVTVALG 828

Query: 52  ISF--RLFYIIYLPER 11
             F  +++ II  PER
Sbjct: 829 CMFTPKMYIIIAKPER 844


>AL592423-3|CAH71182.1| 1194|Homo sapiens glutamate receptor,
           metabotropic 1 protein.
          Length = 1194

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
 Frame = -3

Query: 226 FIFKSQN*YI-YNQFLYFLQRNYTFTVHVYL*F*AFYFGCNY-ILVTDLIVLVKV*FYLN 53
           + FK++N    +N+  Y     YT T  ++L F   YFG NY I+ T   V + V   L 
Sbjct: 770 YAFKTRNVPANFNEAKYIAFTMYT-TCIIWLAFVPIYFGSNYKIITTCFAVSLSVTVALG 828

Query: 52  ISF--RLFYIIYLPER 11
             F  +++ II  PER
Sbjct: 829 CMFTPKMYIIIAKPER 844


>AL592423-2|CAH71181.1|  906|Homo sapiens glutamate receptor,
           metabotropic 1 protein.
          Length = 906

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
 Frame = -3

Query: 226 FIFKSQN*YI-YNQFLYFLQRNYTFTVHVYL*F*AFYFGCNY-ILVTDLIVLVKV*FYLN 53
           + FK++N    +N+  Y     YT T  ++L F   YFG NY I+ T   V + V   L 
Sbjct: 770 YAFKTRNVPANFNEAKYIAFTMYT-TCIIWLAFVPIYFGSNYKIITTCFAVSLSVTVALG 828

Query: 52  ISF--RLFYIIYLPER 11
             F  +++ II  PER
Sbjct: 829 CMFTPKMYIIIAKPER 844


>AL096867-2|CAI20336.1| 1194|Homo sapiens glutamate receptor,
           metabotropic 1 protein.
          Length = 1194

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
 Frame = -3

Query: 226 FIFKSQN*YI-YNQFLYFLQRNYTFTVHVYL*F*AFYFGCNY-ILVTDLIVLVKV*FYLN 53
           + FK++N    +N+  Y     YT T  ++L F   YFG NY I+ T   V + V   L 
Sbjct: 770 YAFKTRNVPANFNEAKYIAFTMYT-TCIIWLAFVPIYFGSNYKIITTCFAVSLSVTVALG 828

Query: 52  ISF--RLFYIIYLPER 11
             F  +++ II  PER
Sbjct: 829 CMFTPKMYIIIAKPER 844


>AL096867-1|CAI20335.1|  906|Homo sapiens glutamate receptor,
           metabotropic 1 protein.
          Length = 906

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
 Frame = -3

Query: 226 FIFKSQN*YI-YNQFLYFLQRNYTFTVHVYL*F*AFYFGCNY-ILVTDLIVLVKV*FYLN 53
           + FK++N    +N+  Y     YT T  ++L F   YFG NY I+ T   V + V   L 
Sbjct: 770 YAFKTRNVPANFNEAKYIAFTMYT-TCIIWLAFVPIYFGSNYKIITTCFAVSLSVTVALG 828

Query: 52  ISF--RLFYIIYLPER 11
             F  +++ II  PER
Sbjct: 829 CMFTPKMYIIIAKPER 844


>AL035698-3|CAI22469.1| 1194|Homo sapiens glutamate receptor,
           metabotropic 1 protein.
          Length = 1194

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
 Frame = -3

Query: 226 FIFKSQN*YI-YNQFLYFLQRNYTFTVHVYL*F*AFYFGCNY-ILVTDLIVLVKV*FYLN 53
           + FK++N    +N+  Y     YT T  ++L F   YFG NY I+ T   V + V   L 
Sbjct: 770 YAFKTRNVPANFNEAKYIAFTMYT-TCIIWLAFVPIYFGSNYKIITTCFAVSLSVTVALG 828

Query: 52  ISF--RLFYIIYLPER 11
             F  +++ II  PER
Sbjct: 829 CMFTPKMYIIIAKPER 844


>AL035698-2|CAI22468.1|  906|Homo sapiens glutamate receptor,
           metabotropic 1 protein.
          Length = 906

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
 Frame = -3

Query: 226 FIFKSQN*YI-YNQFLYFLQRNYTFTVHVYL*F*AFYFGCNY-ILVTDLIVLVKV*FYLN 53
           + FK++N    +N+  Y     YT T  ++L F   YFG NY I+ T   V + V   L 
Sbjct: 770 YAFKTRNVPANFNEAKYIAFTMYT-TCIIWLAFVPIYFGSNYKIITTCFAVSLSVTVALG 828

Query: 52  ISF--RLFYIIYLPER 11
             F  +++ II  PER
Sbjct: 829 CMFTPKMYIIIAKPER 844


>AB208837-1|BAD92074.1|  901|Homo sapiens glutamate receptor,
           metabotropic 1 variant protein.
          Length = 901

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
 Frame = -3

Query: 226 FIFKSQN*YI-YNQFLYFLQRNYTFTVHVYL*F*AFYFGCNY-ILVTDLIVLVKV*FYLN 53
           + FK++N    +N+  Y     YT T  ++L F   YFG NY I+ T   V + V   L 
Sbjct: 765 YAFKTRNVPANFNEAKYIAFTMYT-TCIIWLAFVPIYFGSNYKIITTCFAVSLSVTVALG 823

Query: 52  ISF--RLFYIIYLPER 11
             F  +++ II  PER
Sbjct: 824 CMFTPKMYIIIAKPER 839


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,350,528
Number of Sequences: 237096
Number of extensions: 533583
Number of successful extensions: 580
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3373625546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)