Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12p08
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    27   2.2  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    27   2.2  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    27   3.0  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    26   3.9  
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.2  
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    26   5.2  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    26   5.2  
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    25   6.8  
SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr...    25   9.0  

>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = -3

Query: 464 KQKESPSPQSKRNCATKS----PETTQRKLTRSNTNQKIRDDYLFSLVFSVKLIRDQ 306
           K K+SP  + KR  +  S    PET  RKL  S + +KI    +  L  + +L   Q
Sbjct: 365 KLKDSPFKKPKRRYSKSSTLVLPETNIRKLANSYSQKKIAGSVIEELTTASELFFKQ 421


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 618 SCIAHIYTGVAMFAVQNLFRVVEQAYKIYTV 526
           +C  H Y GV   A+ +L+R     YK+  V
Sbjct: 687 ACTTHFYEGVRKSALSSLWRCATTYYKVCNV 717


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +1

Query: 7   FCRSRFGLYLVDFESPNKTRTAKDSAKLYSKVIASRRLPE---DYNPDDFSAFNS 162
           + R R     V+  S  ++++ KDS+K YS    S    +    YN   F  FNS
Sbjct: 54  YLRERIDALKVESGSERESQSDKDSSKKYSDSAKSTNSDDHLLSYNRSAFDLFNS 108


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 439 NPSATAPRSRQRQRKEN*HGRILTRKYETTTYSH 338
           NP  T+ R RQ++ K+N +  +      T T  H
Sbjct: 390 NPDTTSDRCRQQESKDNGNRTVFLGNLHTKTKGH 423


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -2

Query: 543 YKIYTVFWGFTIFSFLGLVFM-VMMLPE 463
           YKIY       I+ FLG+    VM+LPE
Sbjct: 167 YKIYVTLLKIDIYFFLGVTVQYVMVLPE 194


>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -2

Query: 576 VQNLFRVVEQAYKIYTV-FWGFTIFSFLGLVFMVMMLPETKGKSFASIQAQLRH 418
           V NL   ++    ++ +  W  +    +  V + + LP+ KG+S+  +   +R+
Sbjct: 305 VSNLINHLDGVESVHELHIWQLSDVKLIATVHVCVTLPDDKGESYTKLTTDIRN 358


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 455 ESPSPQSKRNCATKSPETTQRKLTRSNTNQ 366
           E P PQS R+    S   TQR L R   N+
Sbjct: 282 EQPQPQSSRSRPRSSTIPTQRTLERLRENR 311


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 115 RLPEDYNPDDFSAF 156
           RL   YNPDD++AF
Sbjct: 59  RLDASYNPDDYNAF 72


>SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 73  KDSAKLYSKVIASRRLPEDYNPDDFSAFNSAGSH 174
           KD    + K I + +   D N  D+S F +AG H
Sbjct: 61  KDKNNDFWKAIKNAKNASDINFSDYSIFFAAGGH 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,305,163
Number of Sequences: 5004
Number of extensions: 39715
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)