Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12p08
(631 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0702 - 19587943-19588168,19588423-19588525,19588809-195889... 36 0.027
01_06_1111 - 34599014-34599215,34599378-34599497,34599654-345997... 35 0.046
05_04_0043 + 17450999-17451181,17451353-17451416,17451642-174517... 35 0.061
05_04_0044 + 17470457-17470613,17470696-17470789,17471069-174711... 34 0.11
03_03_0040 - 13999040-13999179,13999524-13999638,13999759-139998... 34 0.11
04_04_1600 + 34704527-34704758,34705393-34706777 33 0.19
04_04_0481 - 25541355-25541849,25541933-25542535,25542730-255428... 33 0.19
03_06_0498 - 34341441-34341575,34341808-34341945,34342019-343421... 33 0.19
11_06_0528 - 24681630-24681751,24681911-24682025,24682134-246821... 33 0.25
01_06_1110 - 34582267-34582468,34582732-34582819,34589337-345894... 33 0.25
04_04_0593 - 26480036-26481438,26481915-26482083 32 0.43
06_03_1162 + 28093749-28093851,28093939-28093997,28094691-280947... 31 0.57
05_07_0152 + 28044733-28045032,28045131-28045220,28045770-280458... 31 0.57
01_07_0064 + 40834649-40834786,40834934-40834997,40835333-408353... 31 0.57
01_01_0216 + 1843413-1843509,1844583-1844694,1844841-1844908,184... 31 0.75
10_08_1053 - 22575281-22575409,22575516-22575653,22575786-225758... 31 1.00
09_04_0703 - 19614057-19614264,19615305-19615407,19615880-196159... 31 1.00
05_07_0151 + 28038178-28038480,28038578-28038667,28039130-280391... 31 1.00
03_02_0023 + 5065962-5066079,5066179-5067614 30 1.3
10_05_0036 + 8443957-8444112,8446063-8446129,8446685-8446743,844... 30 1.7
09_04_0352 + 16908942-16909030,16909295-16909464,16909535-169096... 29 3.0
04_04_1601 + 34707975-34708209,34708598-34709970 29 4.0
07_03_0896 + 22373348-22374946 28 5.3
12_02_0509 - 19829360-19830400,19831475-19831821,19831920-19832073 28 7.0
05_04_0039 + 17421826-17421966,17422105-17422168,17422562-174226... 28 7.0
08_01_0869 + 8487518-8487697,8487792-8488127,8488211-8488410,848... 27 9.3
04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019 27 9.3
>09_04_0702 -
19587943-19588168,19588423-19588525,19588809-19588923,
19589061-19589086,19589178-19589398,19589493-19589608,
19589695-19589953,19590052-19590139,19590236-19590307,
19590401-19590476,19590746-19590809,19591139-19591259,
19592391-19592451,19592682-19592828
Length = 564
Score = 35.9 bits (79), Expect = 0.027
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +1
Query: 13 RSRFGLYLVDFESPNKTRTAKDSAKLYS 96
R RFGLY VDF SP +TR + SA+ Y+
Sbjct: 514 RLRFGLYGVDFASPERTRYQRHSARWYA 541
>01_06_1111 -
34599014-34599215,34599378-34599497,34599654-34599760,
34600452-34600480,34600768-34600982,34601215-34601330,
34601960-34602218,34602342-34602429,34602932-34603003,
34603080-34603155,34603579-34603637,34603937-34604000,
34604104-34604232
Length = 511
Score = 35.1 bits (77), Expect = 0.046
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +1
Query: 13 RSRFGLYLVDFESPNKTRTAKDSAKLYSKVIASRRLP 123
++R+GLY VDF+ R AK SA+ Y + S+R P
Sbjct: 469 QTRYGLYRVDFDDAALPRRAKRSARWYRDFLKSKRQP 505
>05_04_0043 +
17450999-17451181,17451353-17451416,17451642-17451700,
17452331-17452406,17452469-17452597,17453524-17453611,
17453711-17453966,17454308-17454423,17454569-17454789,
17454977-17455005,17455167-17455273,17455778-17456015
Length = 521
Score = 34.7 bits (76), Expect = 0.061
Identities = 17/30 (56%), Positives = 19/30 (63%)
Frame = +1
Query: 16 SRFGLYLVDFESPNKTRTAKDSAKLYSKVI 105
S FGL+ VDFE PN R K SA YSK +
Sbjct: 468 SPFGLHYVDFEDPNLPRQPKLSAHWYSKFL 497
>05_04_0044 +
17470457-17470613,17470696-17470789,17471069-17471132,
17471378-17471477,17472027-17472085,17472572-17472647,
17472761-17472832,17473788-17473932,17474044-17474299,
17475190-17475305,17475503-17475723,17475996-17476024,
17476622-17476740,17476828-17477023,17477242-17477250
Length = 570
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +1
Query: 16 SRFGLYLVDFESPNKTRTAKDSAKLYSKVIAS 111
S FGL+ VDFE P+ R K SA+ YSK + S
Sbjct: 528 SPFGLHHVDFEDPSLPRQPKLSAQWYSKFLRS 559
>03_03_0040 -
13999040-13999179,13999524-13999638,13999759-13999818,
14000007-14000060,14000274-14000333,14000418-14000480,
14000552-14000595,14000671-14000755,14000904-14001028,
14001368-14001432,14001460-14001518,14001678-14001743,
14001870-14001935,14002019-14002105,14002168-14002257,
14002378-14002440,14003153-14003419
Length = 502
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = -2
Query: 525 FWGFTIFSFLGLVFMVMMLPETKGKSFASIQAQL 424
F+ F+ S + ++F+VM++PETKG++ IQ L
Sbjct: 459 FFMFSAASLITILFVVMVVPETKGRTLEEIQDSL 492
>04_04_1600 + 34704527-34704758,34705393-34706777
Length = 538
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -2
Query: 621 ASCIAHIYTGVAMFAVQNLFRVVEQAYKIYTVFWGFTIFSFLGLVFMVMMLPETKGKSFA 442
A+ + + V AV F V +A + F F + S L +VF+ +PET GK+
Sbjct: 447 AAALGAVMNRVTSGAVAMSFLSVCRAISVAGAFSVFAVISALSVVFVYRYVPETSGKTLE 506
Query: 441 SIQ 433
I+
Sbjct: 507 EIE 509
>04_04_0481 -
25541355-25541849,25541933-25542535,25542730-25542837,
25542925-25543260,25543391-25543461,25543692-25543824
Length = 581
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -2
Query: 612 IAHIYTGVAMFAVQNLFRVVEQAYKIYTVFWGFTIFSFLGLVFMVMMLPETKGKSFASIQ 433
IA + V+ V F + +A F+ F SF LV + +PETKG F ++
Sbjct: 492 IAAVANWVSNLIVTQTFLSLTKALGTSATFFLFCAVSFFALVVVFFTVPETKGLQFEEVE 551
Query: 432 AQL 424
L
Sbjct: 552 KML 554
>03_06_0498 -
34341441-34341575,34341808-34341945,34342019-34342117,
34342320-34342400,34342548-34342610,34342717-34342764,
34343033-34343410,34345413-34345537,34345635-34345701,
34345797-34345856,34346495-34346621,34346670-34346986
Length = 545
Score = 33.1 bits (72), Expect = 0.19
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -2
Query: 528 VFWGFTIFSFLGLVFMVMMLPETKGKSFASIQAQL 424
+F F S L LVF+++ +PETKG + I+++L
Sbjct: 509 IFLLFGAISLLSLVFVILKVPETKGLTLEEIESKL 543
>11_06_0528 -
24681630-24681751,24681911-24682025,24682134-24682193,
24682454-24682513,24682606-24682668,24682752-24682798,
24682884-24683049,24683136-24683228,24683306-24683370,
24683462-24683537,24683644-24683709,24684114-24684203,
24684359-24684421,24684548-24684670
Length = 402
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -2
Query: 525 FWGFTIFSFLGLVFMVMMLPETKGKSFASIQAQL 424
F+ F + + ++F+V ++PETKGK+ IQA +
Sbjct: 365 FFLFALVCAVAILFIVKIVPETKGKTLEEIQASM 398
>01_06_1110 -
34582267-34582468,34582732-34582819,34589337-34589439,
34589886-34589914,34590114-34590144,34590621-34590822,
34591424-34591539,34591784-34592006,34592151-34592238,
34592336-34592407,34592485-34592560,34593822-34593880,
34595341-34595404,34595487-34595618
Length = 494
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 13 RSRFGLYLVDFESPNKTRTAKDSAKLYSKVIASRRLP 123
+SR GLY VDF+ + R A+ SA+ YS + ++ P
Sbjct: 452 QSRSGLYRVDFDDGARPRRARRSARWYSDFLKGKKDP 488
>04_04_0593 - 26480036-26481438,26481915-26482083
Length = 523
Score = 31.9 bits (69), Expect = 0.43
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = -2
Query: 621 ASCIAHIYTGVAMFAVQNLFRVVEQAYKIYTVFWGFTIFSFLGLVFMVMMLPETKGKSFA 442
AS + + V+ V F + + + +F+ F + S + + F+ +PETKGK+
Sbjct: 428 ASALGQVGGRVSSGLVSMSFLSMARIISVAGMFFVFAVISTVSVAFVYFCVPETKGKTLE 487
Query: 441 SIQ 433
I+
Sbjct: 488 QIE 490
>06_03_1162 +
28093749-28093851,28093939-28093997,28094691-28094766,
28094848-28094919,28095023-28095110,28095230-28095485,
28095583-28095698,28096064-28096127,28096252-28096354,
28096446-28096554,28097048-28097234
Length = 410
Score = 31.5 bits (68), Expect = 0.57
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +1
Query: 19 RFGLYLVDFESPNKTRTAKDSAKLYSKVIASR 114
RFGLY +D+++ N TR K S + +S+V+A +
Sbjct: 376 RFGLYYIDYKN-NLTRIPKASVQWFSQVLAQK 406
>05_07_0152 +
28044733-28045032,28045131-28045220,28045770-28045829,
28045912-28045977,28046161-28046226,28046330-28046405,
28046721-28046785,28046879-28046971,28047302-28047322,
28047600-28047692,28047939-28047998,28048157-28048222,
28048314-28048373,28048498-28048612,28048738-28048850
Length = 447
Score = 31.5 bits (68), Expect = 0.57
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 525 FWGFTIFSFLGLVFMVMMLPETKGKSFASIQAQLR 421
F + + S LVF+++ +PETKG++ IQ R
Sbjct: 413 FVSYMVVSAFTLVFVILWVPETKGRTLEEIQWSFR 447
>01_07_0064 +
40834649-40834786,40834934-40834997,40835333-40835391,
40835602-40835677,40835775-40835846,40837641-40837728,
40838239-40838497,40838766-40839000,40839447-40839470,
40839910-40839997,40840110-40840300,40841082-40841322,
40841803-40842556
Length = 762
Score = 31.5 bits (68), Expect = 0.57
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 22 FGLYLVDFESPNKTRTAKDSAKLYSKVIASRRLPED 129
+GLY VDF ++ R A+ SA+ YS + +R + D
Sbjct: 395 YGLYRVDFADESRPRQARLSARWYSGFLKNREMDVD 430
>01_01_0216 +
1843413-1843509,1844583-1844694,1844841-1844908,
1845165-1845297,1845404-1845503,1845562-1845722,
1846095-1846188,1846273-1846426,1846597-1846743,
1846819-1846892,1846985-1847073,1847161-1847275,
1847569-1847751
Length = 508
Score = 31.1 bits (67), Expect = 0.75
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = -2
Query: 591 VAMFAVQNLFRVVEQAYKIYTVFWGFTIFSFLGLVFMVMMLPETKGKSFASIQAQL 424
V+ F + F V + I TV+ GF L +V++ + ETKG+S I+ L
Sbjct: 449 VSNFFIGLYFLSVVNKFGISTVYLGFASVCALAVVYIAGNVVETKGRSLEEIERAL 504
>10_08_1053 -
22575281-22575409,22575516-22575653,22575786-22575884,
22576281-22576361,22577171-22577233,22577473-22577520,
22577622-22577990,22578082-22578183,22578290-22578414,
22578500-22578566,22578817-22578895,22578928-22579079,
22579182-22579223
Length = 497
Score = 30.7 bits (66), Expect = 1.00
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 528 VFWGFTIFSFLGLVFMVMMLPETKGKSFASIQAQL 424
+F F + + LVF+ ++PETKG + I+A L
Sbjct: 463 LFSAFGVIAVASLVFIFFIVPETKGLTLEEIEASL 497
>09_04_0703 -
19614057-19614264,19615305-19615407,19615880-19615973,
19616216-19616229,19616384-19616595,19617653-19617940,
19618275-19618362,19618444-19618515,19618597-19618672,
19618755-19618813,19618953-19619016,19619253-19619402
Length = 475
Score = 30.7 bits (66), Expect = 1.00
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 13 RSRFGLYLVDFESPNKTRTAKDSAKLYSKVIASRRL-PE 126
R RFGL VDF + +TR K+SA+ YS + L PE
Sbjct: 431 RLRFGLCGVDFTAAARTRYLKNSARWYSGFLRGGELRPE 469
>05_07_0151 +
28038178-28038480,28038578-28038667,28039130-28039189,
28039274-28039339,28039562-28039627,28039719-28039794,
28039972-28040036,28040115-28040192,28040362-28040442,
28040526-28040610,28040702-28040748,28040969-28041028,
28041179-28041244,28041327-28041386,28041524-28041638,
28041733-28041845
Length = 476
Score = 30.7 bits (66), Expect = 1.00
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 525 FWGFTIFSFLGLVFMVMMLPETKGKSFASIQ 433
F + I S LVF++ +PETKG++ IQ
Sbjct: 442 FLSYMIVSAFTLVFVIFWVPETKGRTLEEIQ 472
>03_02_0023 + 5065962-5066079,5066179-5067614
Length = 517
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -2
Query: 564 FRVVEQAYKIYTVFWGFTIFSFLGLVFMVMMLPETKGKS 448
F + A I F+ + + G VFM LPETKGKS
Sbjct: 444 FLSLSNAITIAGSFYLYASIAAAGWVFMYFFLPETKGKS 482
>10_05_0036 +
8443957-8444112,8446063-8446129,8446685-8446743,
8446855-8446930,8447118-8447189,8447326-8447413,
8447489-8447744,8447934-8448049,8448247-8448470,
8448685-8448716,8448882-8449018,8449200-8449289,
8449383-8449557
Length = 515
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +1
Query: 16 SRFGLYLVDFESPNKTRTAKDSAKLYSKVIAS 111
SRFGLY VD++ N+ R K+S + + ++AS
Sbjct: 484 SRFGLYYVDYK--NRKRYPKNSVQWFKNLLAS 513
>09_04_0352 +
16908942-16909030,16909295-16909464,16909535-16909608,
16909828-16909916,16910378-16910492,16910642-16910839
Length = 244
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -2
Query: 591 VAMFAVQNLFRVVEQAYKIYTVFWGFTIFSFLGLVFMVMMLPETKGKSFASIQAQL 424
+ F V F + + + V+ GF SFL +F + ETKG+S I+ L
Sbjct: 180 ICNFLVGLYFLELVKKLGVGAVYAGFGGVSFLSALFAYNFIVETKGRSLEEIEMSL 235
>04_04_1601 + 34707975-34708209,34708598-34709970
Length = 535
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -2
Query: 579 AVQNLFRVVEQAYKIYTVFWGFTIFSFLGLVFMVMMLPETKGKSFASIQA 430
AV F + A + F F S L +VF+ + +PE GKS I++
Sbjct: 460 AVAMSFLSICGAVSVAGAFAAFAAISALSVVFVHVFVPEMSGKSLEQIES 509
>07_03_0896 + 22373348-22374946
Length = 532
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -2
Query: 525 FWGFTIFSF-LG-LVFMVMMLPETKGKSFASIQAQLRHEVA 409
FW F +F +G L + LPET+G+S + + H+ A
Sbjct: 478 FWSFGVFGLAVGCLGLFAVCLPETRGRSMSDTMEEEEHKEA 518
>12_02_0509 - 19829360-19830400,19831475-19831821,19831920-19832073
Length = 513
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 579 AVQNLFRVVEQAYKIYTVFWGFTIFSFLGLVFMVMMLPETKGKSFASIQA 430
AV F + +A + F+ F S VF+ LPETKG+S ++A
Sbjct: 450 AVGMSFISLYEAAGMAGTFYLFAACSAAAWVFVYACLPETKGRSLEEMEA 499
>05_04_0039 +
17421826-17421966,17422105-17422168,17422562-17422620,
17423410-17423536,17425029-17425116,17425196-17425451,
17425565-17425680,17426232-17426328,17426636-17426771,
17426892-17426979,17427133-17427367
Length = 468
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 22 FGLYLVDFESPNKTRTAKDSAKLYSKVIASR---RLPED 129
FGL VDF+S + R + SA YS+ + + R+ ED
Sbjct: 419 FGLVAVDFDSEKRRRQPRRSASWYSEFLKNNSVIRVEED 457
>08_01_0869 +
8487518-8487697,8487792-8488127,8488211-8488410,
8488586-8488973
Length = 367
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 37 VDFESPNKTRTAKDSAKLYSKVIASRRLPEDYNPD 141
+D E K + D+ K+Y SRR P Y P+
Sbjct: 329 LDEEGKQKLKDVDDNYKIYDYCTDSRRYPNGYPPE 363
>04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019
Length = 508
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/64 (21%), Positives = 29/64 (45%)
Frame = -2
Query: 579 AVQNLFRVVEQAYKIYTVFWGFTIFSFLGLVFMVMMLPETKGKSFASIQAQLRHEVARDN 400
A+ +F + Y I + + +G +F ++LPE+KGKS + ++ D
Sbjct: 435 AIVGVFGFLYTEYHIRIFLFVLIGCNLVGFIF-TLLLPESKGKSLEDLTGEIEEFQEEDE 493
Query: 399 AKKI 388
++
Sbjct: 494 GSEV 497
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,175,369
Number of Sequences: 37544
Number of extensions: 232735
Number of successful extensions: 659
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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