Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12p06
(671 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp... 149 4e-37
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida... 56 4e-09
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom... 29 0.46
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 28 1.4
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom... 27 3.3
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 26 4.3
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.3
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 26 5.7
SPAC18G6.01c |||conserved fungal protein|Schizosaccharomyces pom... 25 7.5
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 9.9
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.9
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 25 9.9
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 25 9.9
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 9.9
>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
beta subunit Qcr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 457
Score = 149 bits (361), Expect = 4e-37
Identities = 77/177 (43%), Positives = 109/177 (61%), Gaps = 1/177 (0%)
Frame = -2
Query: 661 DNIPLMVANTLIGAWDRSQGGGANNASYLARAASVGNLCHSFQSFNTCYKDTGLWGIYFV 482
D +V +IG WDR+ G + +S L+ L +SF SF+T Y DTGLWGIY V
Sbjct: 277 DYFTALVMQAIIGNWDRAMGASPHLSSRLSTIVQQHQLANSFMSFSTSYSDTGLWGIYLV 336
Query: 481 AESL-QLDDMLYNIQKEWMKLCTSVTEGEVERAKNLLKTNMLLQLDGTTPVCEDIGRQML 305
E+L ++DD+++ + W +L T T EVERAK L+ ++LL LD TT + EDIGRQ+L
Sbjct: 337 TENLGRIDDLVHFTLQNWARL-TVATRAEVERAKAQLRASLLLSLDSTTAIAEDIGRQLL 395
Query: 304 CYNRRIPIHELDARIESVTVQNVRDVCYKYLFDRCPAVAAVGPTEGLPDYTRIRGGM 134
RR+ E+D RI +T ++V V + ++D+ AV+AVG EGL DY RIR +
Sbjct: 396 TTGRRMSPQEVDLRIGQITEKDVARVASEMIWDKDIAVSAVGSIEGLLDYNRIRSSI 452
>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 494
Score = 56.4 bits (130), Expect = 4e-09
Identities = 48/161 (29%), Positives = 73/161 (45%), Gaps = 8/161 (4%)
Frame = -2
Query: 670 TDADNIPLMVANTLIGAWDRSQGGGANNASYLARAASVGNL---CHSFQSFNTCYKDTGL 500
TD D L L+G GG Y +V N + +FN Y D+GL
Sbjct: 299 TDPDIYALACLQFLLGGGGSFSAGGPGKGMYSRLYLNVLNQYPWVETCMAFNHSYTDSGL 358
Query: 499 WGIYFVAESLQLDDMLYN----IQKEWMKLCTSVTEGEVERAKNLLKTNMLLQLDGTTPV 332
+G++ LDD + I +E SVT E ERAKN LK+++L+ L+
Sbjct: 359 FGMFVTI----LDDAAHLAAPLIIRELCNTVLSVTSEETERAKNQLKSSLLMNLESRMIS 414
Query: 331 CEDIGRQMLCYN-RRIPIHELDARIESVTVQNVRDVCYKYL 212
ED+GRQ+ N I E+ +I+++T ++ V + L
Sbjct: 415 LEDLGRQIQTQNGLYITPKEMIEKIDALTPSDLSRVARRVL 455
>SPCC1442.02 ||SPCC1450.18|DUF1760 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 562
Score = 29.5 bits (63), Expect = 0.46
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Frame = -2
Query: 433 WMKLCTSVTEGEVERAKNLLKTNMLLQLDGTTPVCEDI--GRQMLCYNRRIPIHELDARI 260
+ K C+ V + E KN + N LL + ED+ Q L Y + + I
Sbjct: 458 YQKQCSLVKDSNEEGLKNFVSPNTLLDVFKVFDAMEDVELDSQSLSYIHQTLVFLYSLEI 517
Query: 259 ESVTVQN-VRDVCYKYLFDRCPAVAAVGPTEGLPDYTRI 146
+++ QN V + + D+ PT+GL Y +
Sbjct: 518 QNLLSQNQFPTVYFTKISDQINNYEGELPTDGLKYYIEL 556
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 27.9 bits (59), Expect = 1.4
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 345 PSSCKSMLVLSKFLARSTSPSVT-DVQSFIHSF-WMLYNISSSCRLSAT 485
P SC L+ F SV+ D SF H WML N+ S CR+ A+
Sbjct: 835 PLSCIPSSSLTNFTQPLVPFSVSRDPISFYHPLHWMLSNLFSYCRVDAS 883
>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 412
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 319 GRQMLCYNRRIPIHELDARIESVTVQNVRDVCYKYL 212
G ML Y+ + HE+ + V + D C KYL
Sbjct: 183 GHTMLVYSNSLLNHEIIVTTSDIAVGDYLDKCAKYL 218
>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 292
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 321 ISSQTGVVPSSCKSMLVLSKFLARSTSPSV 410
ISS G PS C SM SKF S ++
Sbjct: 133 ISSVAGYYPSPCLSMYNASKFAVEGLSQTI 162
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +3
Query: 342 VPSSCKSMLVLSKFLARSTSPSVTDVQSFIHSFWMLYNISSSCRLSATK*MPHRPVS 512
+ SCK++ + S+ + + SP T +++++ S W L + SS + + T P P S
Sbjct: 558 INDSCKAIDIHSEKPSFADSPRKTSLRNYLSSSWRLKFMRSSYQNNETD--PLNPTS 612
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 430 SIPSGCYITYRQVVDSQLQSKCPIDQCLYNKC*RTGN 540
S+ S + RQVV Q+ C + CL + TGN
Sbjct: 97 SLISSQIVNQRQVVQEQMYFLCNLKNCLIDNNFPTGN 133
>SPAC18G6.01c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 574 ARAASVGNLCHSFQSFNTCYKDTGLW 497
A A+V +F TC+K+T LW
Sbjct: 170 AEQAAVSKFRSTFPVNRTCFKETALW 195
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.0 bits (52), Expect = 9.9
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -2
Query: 493 IYFVAESLQLDDMLYNIQKEWMKLCTSVTEGEVERAKNLLKTNMLLQLDGT 341
IY + LDD+L IQK LC E + L + L LDG+
Sbjct: 714 IYVHSPDQNLDDLLSIIQKYIGSLCIG-NEHVIREVAELYQVAKSLSLDGS 763
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 327 SQTGVVPSSCKSMLVLSKFLARSTSPSVTDVQS 425
S + V+PSS SML S A S+S S + + S
Sbjct: 36 SSSSVIPSSSSSMLSSSSATAISSSSSSSPLSS 68
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 339 VVPSSCKSMLVLSKFLARSTSPSVTDV 419
V+P++CKS++VLS+ RST+ + +
Sbjct: 286 VLPTTCKSLVVLSQ--VRSTAVGTSSI 310
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 25.0 bits (52), Expect = 9.9
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +2
Query: 131 VHSTTNPSVVRKTFSRSN-GSYSWTTVK*VFVANITYILYSNRFNTSIKFMDGDASVVAE 307
V+++ ++ FS N S SW +++ + Y+ FN++ + G+ S +A
Sbjct: 669 VYTSEGYAISTSGFSLWNPSSKSWVSMEKLGFYMSGYLFDIPGFNSTQRIYSGNLSAIAS 728
Query: 308 HLTTNIFTDRSGSI 349
+ T NI S S+
Sbjct: 729 YSTRNIAHFSSDSL 742
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -2
Query: 358 LQLDGTTPVCEDIGRQMLCYNRRIP-IHELDARIESVTVQNVRD 230
LQL + C D+ R+++C + ++E +R TVQ D
Sbjct: 475 LQLTASRTQCSDLSREVICLMAELDHLNETKSRNVPATVQVALD 518
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,609,340
Number of Sequences: 5004
Number of extensions: 52103
Number of successful extensions: 160
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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