Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12p03
(665 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 175 5e-45
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 175 5e-45
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 175 5e-45
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||... 132 6e-32
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 3.2
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 26 4.2
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 26 5.6
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 26 5.6
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 7.4
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 175 bits (426), Expect = 5e-45
Identities = 85/93 (91%), Positives = 89/93 (95%)
Frame = -1
Query: 665 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 486
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV
Sbjct: 44 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVS 103
Query: 485 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 387
LFEDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct: 104 LFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 175 bits (426), Expect = 5e-45
Identities = 85/93 (91%), Positives = 89/93 (95%)
Frame = -1
Query: 665 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 486
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV
Sbjct: 44 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVS 103
Query: 485 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 387
LFEDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct: 104 LFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 175 bits (426), Expect = 5e-45
Identities = 85/93 (91%), Positives = 89/93 (95%)
Frame = -1
Query: 665 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 486
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV
Sbjct: 44 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVS 103
Query: 485 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 387
LFEDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct: 104 LFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136
>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
2|||Manual
Length = 120
Score = 132 bits (318), Expect = 6e-32
Identities = 67/96 (69%), Positives = 81/96 (84%), Gaps = 6/96 (6%)
Frame = -1
Query: 665 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF----KTD--LRFQSAAIGALQEAS 504
PGT ALREIR+YQ+ST+LLI++LPF R+VREI+ +F TD LR+QS A+ LQEA+
Sbjct: 24 PGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVANFSTDVGLRWQSTALQCLQEAA 83
Query: 503 EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 396
EA+LV LFEDTNLCAIHAKRVTIM +D+QLARRIRG
Sbjct: 84 EAFLVHLFEDTNLCAIHAKRVTIMQRDMQLARRIRG 119
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 26.6 bits (56), Expect = 3.2
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +3
Query: 426 LRHDGHTFGVNSTQVGVFEQANEISLACLLESSDGGRLETQI-SFEILSDFSHKTLERQL 602
LR+ T + + + QA LE S + Q+ SFEIL +TLE
Sbjct: 73 LRNKSLTINIEDIYLSIHPQAKNSLTRDELEQSQQALKQEQLDSFEILRKNFRETLEESS 132
Query: 603 TDKQLSR 623
++ +SR
Sbjct: 133 SNPNISR 139
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 26.2 bits (55), Expect = 4.2
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +3
Query: 465 QVGVFEQANEISLACLLESSDGGRLETQISFEILSDFSHKTLERQLTDKQLSRLLITTN 641
Q+G F +AN I A + + E + EIL ER L+ K+ +R T+N
Sbjct: 112 QIGAFFKANAIQPASRIANRKNNEKEDEFMAEILGSIDQDIPER-LSTKKGNRSHTTSN 169
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 25.8 bits (54), Expect = 5.6
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = -1
Query: 641 IRRYQKSTELLIRKLPFQRLVREIAQ--DFKTDLRF---QSAAIGALQEASEAYLVGLFE 477
+ +++ S LLI P Q +RE+A DF +F + + A E EAY+ L E
Sbjct: 524 LSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKFEIREEINLEAPDEEQEAYIRSLQE 583
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -1
Query: 653 ALREIRRYQKSTELLIRKLPFQR 585
A RE+++ ++ EL++ LPFQR
Sbjct: 340 APREVKQIEQPKELVLNLLPFQR 362
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 510 LLESSDGGRLETQISFEILSD 572
L + DGG+LE Q+ +++L D
Sbjct: 72 LFTTDDGGKLELQVYYQLLVD 92
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,555,500
Number of Sequences: 5004
Number of extensions: 48403
Number of successful extensions: 132
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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