Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12o21
         (607 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ386730-1|ABD46888.1|  301|Homo sapiens cardiolipin synthase pr...    31   4.2  
BC069010-1|AAH69010.1|  205|Homo sapiens CRLS1 protein protein.        31   4.2  
AL035461-9|CAB55278.1|  301|Homo sapiens cardiolipin synthase 1 ...    31   4.2  
AF241784-1|AAG44472.1|  301|Homo sapiens CAPTase-iso protein.          31   4.2  
BC099916-1|AAH99916.2|  677|Homo sapiens RNA binding motif prote...    29   9.6  

>DQ386730-1|ABD46888.1|  301|Homo sapiens cardiolipin synthase
           protein.
          Length = 301

 Score = 30.7 bits (66), Expect = 4.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 162 SRQRTCWSLLSPQSLCLMCL 103
           S++R CW+LL P   CL CL
Sbjct: 26  SKRRACWALLPPVPCCLGCL 45


>BC069010-1|AAH69010.1|  205|Homo sapiens CRLS1 protein protein.
          Length = 205

 Score = 30.7 bits (66), Expect = 4.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 162 SRQRTCWSLLSPQSLCLMCL 103
           S++R CW+LL P   CL CL
Sbjct: 26  SKRRACWALLPPVPCCLGCL 45


>AL035461-9|CAB55278.1|  301|Homo sapiens cardiolipin synthase 1
           protein.
          Length = 301

 Score = 30.7 bits (66), Expect = 4.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 162 SRQRTCWSLLSPQSLCLMCL 103
           S++R CW+LL P   CL CL
Sbjct: 26  SKRRACWALLPPVPCCLGCL 45


>AF241784-1|AAG44472.1|  301|Homo sapiens CAPTase-iso protein.
          Length = 301

 Score = 30.7 bits (66), Expect = 4.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 162 SRQRTCWSLLSPQSLCLMCL 103
           S++R CW+LL P   CL CL
Sbjct: 26  SKRRACWALLPPVPCCLGCL 45


>BC099916-1|AAH99916.2|  677|Homo sapiens RNA binding motif protein
           35A protein.
          Length = 677

 Score = 29.5 bits (63), Expect = 9.6
 Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
 Frame = -1

Query: 259 ANLTAVPSVPGTIT-IQNV--SPAVKLVTNYTKNYQPA-EDVLV 140
           ANL+ VP  PGT+  +Q +  +  VK + N+++ YQ A ED L+
Sbjct: 618 ANLSGVPPQPGTVVRMQGLAYNTGVKEILNFSQGYQYATEDGLI 661


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,349,989
Number of Sequences: 237096
Number of extensions: 1827466
Number of successful extensions: 4162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4162
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6410414940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)