Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12o21
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.1  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   7.1  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.4  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 148 VLVPAKSTVVVSYVPIKHEKREKD 77
           +L+   ST VVS    KH +R +D
Sbjct: 13  LLLSIASTYVVSVAGYKHSRRHRD 36


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 459 FQLTKTTPLF*IW 421
           F L K +PLF IW
Sbjct: 303 FNLVKISPLFTIW 315


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 459 FQLTKTTPLF*IW 421
           F L K +PLF IW
Sbjct: 53  FNLVKISPLFTIW 65


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -2

Query: 303 PVTWRCTTRPGRISTRIS 250
           P+T+RC     +I +R++
Sbjct: 368 PITFRCLEENNKIDSRVT 385


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +3

Query: 129 DLAGTSTSSAG 161
           DLAGTS  SAG
Sbjct: 337 DLAGTSQGSAG 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,009
Number of Sequences: 438
Number of extensions: 3567
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)