Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12o18
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    30   0.016
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    30   0.016
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   4.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   7.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.5  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.9  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 30.3 bits (65), Expect = 0.016
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = -1

Query: 500 ELQSENEWGN*RFRQSAFR*DYRRNPWDSHYW 405
           ELQSEN  G   +  S      RRNPW S YW
Sbjct: 254 ELQSENIPGFDDYMASLTPDTNRRNPWFSEYW 285


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 30.3 bits (65), Expect = 0.016
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = -1

Query: 500 ELQSENEWGN*RFRQSAFR*DYRRNPWDSHYW 405
           ELQSEN  G   +  S      RRNPW S YW
Sbjct: 344 ELQSENIPGFDDYMASLTPDTNRRNPWFSEYW 375


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 149 FKRNRATYVFKYKAQVNYY 93
           F+RNR   +  +K +VN+Y
Sbjct: 291 FERNRLQLLESFKRKVNFY 309


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +2

Query: 410 NVSPKDYVCSLIGKHFDETFSFPIRFRS 493
           N+  K Y C L  K FD+   +    RS
Sbjct: 56  NIEEKTYQCLLCQKAFDQKNLYQSHLRS 83


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 450 STLTKPSVSPFVFALEFARNG 512
           S +T+PS S   + LE  RNG
Sbjct: 194 SQMTEPSSSTKSYVLEGPRNG 214


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 434 RRNPWDSHYW 405
           RRNPW   +W
Sbjct: 421 RRNPWFVEFW 430


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -2

Query: 484 TNGETEGFVKVLSDKTTDVILGTHIIGPGGGEL 386
           T+G   GF + + DK   V  G     P  G L
Sbjct: 43  TSGLVRGFPRTVLDKEVHVFYGIPFAKPPIGPL 75


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -2

Query: 484 TNGETEGFVKVLSDKTTDVILGTHIIGPGGGEL 386
           T+G   GF + + DK   V  G     P  G L
Sbjct: 43  TSGLVRGFPRTVLDKEVHVFYGIPFAKPPIGPL 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,830
Number of Sequences: 438
Number of extensions: 3217
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)