Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12o12
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    32   0.085
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb...    29   0.80 
SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe...    27   2.4  
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    25   9.8  
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    25   9.8  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    25   9.8  

>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 31.9 bits (69), Expect = 0.085
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = -2

Query: 380  RAWYTWXXXXXRP*GFIQSLQWCHGSPIAMLNLEILQYHQGPVSLCLHHHPVWGSDV 210
            R+ YTW             + WCH   I+ +N  +L   Q P+  CL  +     DV
Sbjct: 1318 RSPYTWKSASQVSYNASLLINWCHQKGISYVNSSLLPLMQSPLVFCLRKNDANDLDV 1374


>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = -1

Query: 285 LRNSTIPSGASVALSPPPPCVGLRRGAL 202
           LRNS  P+ AS  L+PPPP    R G L
Sbjct: 8   LRNSRAPT-ASQLLNPPPPSSSTRSGRL 34


>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 405

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -2

Query: 317 WCHGSPIAMLNLEILQYHQGPVSLCLHHHPVWGSDVEHF 201
           +C+ + IA+  LE+L+YHQ  + + +  H   G  VE F
Sbjct: 147 FCYVNDIALAALELLKYHQRVLYIDIDVH--HGDGVEEF 183


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
 Frame = -1

Query: 624 DYSGEQKPFIDLXIEIAEEKGLSDMEVIHELATFIAAGHDTV-----PYTLLYTLMCVGS 460
           D S E+K  +    E+   K +     I   ++ I   +DT+     P  + Y+ +  G+
Sbjct: 43  DKSSEKKDEVKKQREVKRFKRVGKRGKIGSPSSSIRKQNDTIDWKNSPLCVFYSTLG-GT 101

Query: 459 HPPVQQRIYEELQQVLGSDDVTKQNL 382
                ++++EEL  +L  DD+   NL
Sbjct: 102 AERYAKQVHEELSSLLQRDDIQLLNL 127


>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 600 FIDLXIEIAEEKGLSDMEVIHELATFIAAGHDTVPYTLLYTLM 472
           F+ L  E+ EE+G S   + HE   +I   H+ V Y L  + M
Sbjct: 32  FLPLKSEVEEEQGFSTPCLTHEGINYIYIHHNDV-YLLALSKM 73


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 265 WYCRISKFNIAIGDP 309
           WYC   KFNI+  DP
Sbjct: 310 WYCDACKFNISDYDP 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,704,203
Number of Sequences: 5004
Number of extensions: 52892
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)