Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12o08
         (596 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    26   0.28 
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    24   0.85 
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    24   0.85 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   3.4  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   6.0  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   7.9  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 201 RSCNNYWRCQ 172
           +SCN YW+CQ
Sbjct: 168 KSCNRYWQCQ 177


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 204 HRSCNNYWRC 175
           H SC+ YW+C
Sbjct: 35  HTSCDKYWKC 44


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 204 HRSCNNYWRC 175
           H SC+ YW+C
Sbjct: 35  HTSCDKYWKC 44


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 265 SRASPPEAKDLRTRLKMRISPSAEPTD 345
           S  S  E KD+ T L    SP+ +P D
Sbjct: 116 SPKSEKEEKDMETTLTPCASPNRKPDD 142


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 37  TSWATYSRTRLTSAA*SVR*TGIFSRKLLTAGPTSRP 147
           TS  TYS   + ++  SV  T  +   L   G TS+P
Sbjct: 91  TSNPTYSSRSVMTSCSSVPTTASYGSDLYFPGATSQP 127


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -2

Query: 415 CICVVSATSAPDST*SWLF 359
           C C  S +  P ST  W F
Sbjct: 554 CYCYYSISIRPISTLGWFF 572


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,706
Number of Sequences: 336
Number of extensions: 2228
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)