Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12o08
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0506 + 4017568-4017716,4018171-4018474 30 1.2
12_01_0204 + 1539859-1540158 30 1.2
11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,422... 30 1.2
04_04_1110 + 30973202-30973870 30 1.2
03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499... 30 1.2
11_01_0417 - 3214320-3214435,3214606-3214702,3214766-3214768,321... 29 3.7
03_02_0114 + 5704002-5704037,5704547-5704666,5705040-5705076,570... 29 3.7
02_04_0267 - 21430370-21430474,21430559-21430618,21430937-214310... 29 3.7
12_02_0820 + 23437811-23440230,23440336-23440534 28 4.9
05_03_0478 - 14526180-14526578 28 4.9
05_01_0579 - 5196888-5196970,5197063-5197621,5197704-5197786,519... 28 6.5
01_06_0034 + 25769436-25769701,25769749-25769887 28 6.5
12_02_0959 + 24818310-24818369,24818689-24819136,24819265-248194... 27 8.6
12_01_0574 - 4697425-4698312 27 8.6
12_01_0149 - 1150949-1151041,1151145-1151190,1151343-1151460,115... 27 8.6
06_03_0291 + 19198302-19198333,19199218-19199734,19200171-192003... 27 8.6
05_06_0263 + 26752759-26754393 27 8.6
05_05_0321 + 24091997-24092530 27 8.6
02_05_1057 + 33809982-33810366,33810436-33810687,33810727-338109... 27 8.6
>12_01_0506 + 4017568-4017716,4018171-4018474
Length = 150
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +3
Query: 63 TADLGCVVRQVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGS 242
T +L V+ + ++ DG ++ ++ E D+E++ D Y + DV + V E GS
Sbjct: 72 TGELDVAYIYVEEPEIVDLCDGSADNSNYEADMELKVDSEEEYVNMDVEVD--VGEATGS 129
Query: 243 GSLSNDVLK-GKSSGS 287
G V + G++SGS
Sbjct: 130 GCKGKAVEEHGEASGS 145
>12_01_0204 + 1539859-1540158
Length = 99
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 506 YAGSWSPPGASDIINFSGRVTDVKADD 426
+AGSW+ G + +F GRVT V+ D
Sbjct: 38 HAGSWNGEGQGGLAHFGGRVTRVRRGD 64
>11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,
4221561-4222094,4222388-4222842,4223073-4223189,
4223319-4223477
Length = 2170
Score = 30.3 bits (65), Expect = 1.2
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Frame = -1
Query: 350 SASVGSAEGEIRIFSRVLRSFASGGLALENVVAEATASVSLADNIIVSD--IGAAITIGD 177
S S E +R +R+L + +A + V + S N +S+ IGA I +G
Sbjct: 1440 SGSTFVVEPAVRALNRLLDEEYNAEIAATSEVVDLLVSFVPGTNHQLSEACIGALIKLGK 1499
Query: 176 VKSNLQINLFGREVGPAVNNFLEKIPVYLTDYAAEVSRVL 57
+ N ++ + + V + + +PV ++ AE+ R+L
Sbjct: 1500 DRPNCKLEMVKAGIIEHVLDMILDVPVSVSSSIAELLRIL 1539
>04_04_1110 + 30973202-30973870
Length = 222
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +1
Query: 166 LDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEP 339
L + + + +P S T+ S+R+T A A ++A P + L L M +A+P
Sbjct: 97 LPKAAALAVVSPTSSTVESSSRDTPAAAPVAAAAKAQVPASPSLDLSLGMSAMVAAQP 154
>03_05_1122 +
30546314-30549277,30549615-30549693,30549857-30549945,
30550422-30550538,30550873-30551111,30552279-30552365,
30552732-30552831,30553319-30553532,30553617-30553777
Length = 1349
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = +3
Query: 132 SNFASEEIDLEVRFDIANSYCSSDVTDN---DVVCEGDGSGSLSNDVLKGKSSG 284
SN +D E +A C D+ + D++ EGD G L+ D + G
Sbjct: 54 SNSMKMHVDAETAGGVALDVCKGDILEKKQCDIIAEGDRGGVLTVDTCNAEEDG 107
>11_01_0417 -
3214320-3214435,3214606-3214702,3214766-3214768,
3215054-3215196,3215309-3215348,3215713-3215765,
3215889-3215962,3216081-3216163,3216287-3216355,
3216456-3216800
Length = 340
Score = 28.7 bits (61), Expect = 3.7
Identities = 33/149 (22%), Positives = 67/149 (44%), Gaps = 3/149 (2%)
Frame = +3
Query: 33 DDELGDVLQNTADLGCVVRQVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTD 212
+DEL +LQ+ AD+ + + + V+G S E+ L V+ + + ++ D
Sbjct: 117 EDELLSLLQSLADMDITYKALQETDIGRHVNGLRKHPSGEVRLLVK-QLIRKW--KEIVD 173
Query: 213 NDVVCEGDGSGSLSNDVLKGKSSGSE---RPQDAAENADFSFSGTD*C*NSGNSQD*VES 383
D V + SG SN ++ +S + + Q +++ ++F +S + N+ +S+
Sbjct: 174 -DWVRLHNSSGDASNSIITDGNSPEKIQGKNQQSSQVSEFKYSPSPSRHNNSSSERVSNG 232
Query: 384 GADVADTTQMQGAEVISLDVSHAAREVND 470
A +A T H AR++N+
Sbjct: 233 IASIAATKH----RASPAPAHHNARQINN 257
>03_02_0114 +
5704002-5704037,5704547-5704666,5705040-5705076,
5705905-5705981,5706642-5706755,5706902-5706969,
5707051-5707129,5707367-5707511,5707627-5707731,
5707917-5707994,5708192-5708247,5708533-5708651,
5708853-5709096,5709203-5709385,5709956-5710264,
5710350-5710399,5711042-5711102,5711184-5711267,
5711461-5711577,5711665-5711831,5711938-5712010,
5712497-5712581,5712693-5712886,5713073-5713228
Length = 918
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +3
Query: 147 EEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSER-PQDAAENADF 323
EE D E+ D+ + CSSD + + D S NDV SG + +D ++ ++
Sbjct: 419 EEYD-EIFDDLEDGSCSSDAYTDSEDGDVDKEYSTDNDVDGSYDSGEDNIEEDMEDDTEY 477
Query: 324 SFSGTD 341
S G++
Sbjct: 478 SSGGSE 483
>02_04_0267 -
21430370-21430474,21430559-21430618,21430937-21431046,
21431220-21431295,21431541-21431594,21431935-21432006,
21432088-21432173,21432694-21432750,21432886-21432991
Length = 241
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/102 (18%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Frame = -1
Query: 452 RVTDVKADDFSSLH-LRRVSYVGTRLNLVLAVPRVSASVGSAEGEIRIFSRVLRSFASGG 276
++ + LH L + ++ ++ ++P + ++ + +L SF +G
Sbjct: 107 QIASIVCSGIQPLHNLTVLRFIEKKVGTGESIPWTQQQIDRGFADLLLCHTMLTSFPNG- 165
Query: 275 LALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQINL 150
+A EN+V + D + ++D+ A I + QIN+
Sbjct: 166 VAAENLVKGCAGKYATGDEVRLADVFLAPQIYAAVTRFQINM 207
>12_02_0820 + 23437811-23440230,23440336-23440534
Length = 872
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +3
Query: 36 DELGDVLQNTADLGC-VVRQVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTD 212
D+L +Q+ ++ VR + + + ++ WS+ EEI DI + Y S D
Sbjct: 252 DKLATYMQDIFNITAKAVRGDEESVALQAIEFWSSICDEEI------DILDEYSSEFTAD 305
Query: 213 NDVVC 227
+DV C
Sbjct: 306 SDVPC 310
>05_03_0478 - 14526180-14526578
Length = 132
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = -3
Query: 138 SWTSRQQLPREDPCLPDGLRS---RGQPCSGVRRPTRH 34
SW RQ+ ED DG R RGQ RRP RH
Sbjct: 54 SWARRQRRDEEDHRQHDGYRGARRRGQEDHRRRRPRRH 91
>05_01_0579 -
5196888-5196970,5197063-5197621,5197704-5197786,
5199165-5199279,5199376-5199473,5200136-5200183,
5200313-5200415,5201003-5201119,5201254-5201430,
5202563-5202593,5203492-5203604,5203824-5204036
Length = 579
Score = 27.9 bits (59), Expect = 6.5
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Frame = -1
Query: 476 SDIINFSGRVTDVKADDFSSLHLRRVSYVGTRLNLVLAVPRVSASVGSAEGEIRIFSRVL 297
S++++FS + F S L + G+ V P VSASV S G F +
Sbjct: 452 SEMMSFSTPLLQKLERCFPSNMLVDLPREGSSRTCVFHFPAVSASVVSLTGAGDCFVGGV 511
Query: 296 RSFASGGLALENVVAE--ATASVSLADNIIVSDIGAAITIGDVKSNLQIN 153
S GGL + VA A A S+ + D +A TI + + I+
Sbjct: 512 ISALCGGLGMMQSVAVGIAIAKSSVESEANIPDKFSAATIAGITPCISIS 561
>01_06_0034 + 25769436-25769701,25769749-25769887
Length = 134
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 201 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAE 311
+V +D +C+G+G G + G ++ RPQ A E
Sbjct: 16 EVESSDTICQGEGPGEGGHPDPAGPAAALLRPQVAGE 52
>12_02_0959 +
24818310-24818369,24818689-24819136,24819265-24819482,
24819651-24819929
Length = 334
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Frame = +3
Query: 201 DVTDNDVV---CEGDGSGSLSNDVLKGKSSGSER 293
++ +ND++ C G G+GS S DVL +SG E+
Sbjct: 73 ELQENDLLFFTCNGHGNGSCSFDVLIFDASGCEK 106
>12_01_0574 - 4697425-4698312
Length = 295
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Frame = -1
Query: 362 VPRVSASVGSAEGE------IRIFSRVLRSFASGGLALENVVAEATASVSLA 225
V + VG+AEGE +R+ +R R + S GLA+ +V A A+ +LA
Sbjct: 220 VAAAAGDVGAAEGELREAQRLRVAARRRRLWLSAGLAVLLLVVLAAAAAALA 271
>12_01_0149 -
1150949-1151041,1151145-1151190,1151343-1151460,
1151541-1151637,1151711-1151908,1152024-1152086,
1152384-1152443,1152558-1152660,1154398-1154507
Length = 295
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +3
Query: 126 GWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSE 290
GWSN D D+A + S + +D+ E +L D+LK + SE
Sbjct: 66 GWSNLVCSREDHAKSVDVAVLFLGSKLQSSDISKEKQADSTLV-DMLKNSFASSE 119
>06_03_0291 +
19198302-19198333,19199218-19199734,19200171-19200383,
19201067-19201111,19201671-19201945,19202041-19202152,
19202453-19202539,19202727-19202963,19204127-19204825
Length = 738
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +1
Query: 97 TGIFSRKLLTAGPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETEAVA 249
TG F+ +L G + L W LD TS V + P S + + E EA A
Sbjct: 564 TGFFNSDVLKGGDFCGEELLTWALDPTS--VSSLPSSTRTVKTMSEVEAFA 612
>05_06_0263 + 26752759-26754393
Length = 544
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Frame = -1
Query: 173 KSNLQINLFGREVGPAVNNFLEKIP----VYLTDYAAE 72
K +L+ NLFG E G A++ L K+P +YL+D E
Sbjct: 331 KLDLRDNLFGVEAGLALSKTLSKLPDLVELYLSDLNLE 368
>05_05_0321 + 24091997-24092530
Length = 177
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/78 (21%), Positives = 31/78 (39%)
Frame = +3
Query: 87 RQVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVL 266
RQV R E++ S+F+ + + ++ D +N GDG G +
Sbjct: 15 RQVGRSREEELLGLLSDFSGDSGEFGRELSFSDLVVVEDTANNPSPRGGDGGGDRAAPTA 74
Query: 267 KGKSSGSERPQDAAENAD 320
+G RP ++E +
Sbjct: 75 AAAENGQARPSSSSEQEE 92
>02_05_1057 +
33809982-33810366,33810436-33810687,33810727-33810926,
33811021-33811122
Length = 312
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 216 DVVCEGDGSGSLSNDVLKGKSSGSERPQDAA 308
+V C G G G+++ D +G SG R DAA
Sbjct: 120 NVGCIGGGGGNITVDGFRGGGSGGGRGGDAA 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,880,435
Number of Sequences: 37544
Number of extensions: 300424
Number of successful extensions: 1111
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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