Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12n24
         (639 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    24   1.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   4.4  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 144 CINELTSVYFRFRFEQNVCESF 79
           CI  L S  FRF F+  +C+ F
Sbjct: 60  CIYALFSKDFRFAFKSIICKCF 81


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 144 CINELTSVYFRFRFEQNVCESF 79
           CI  L S  FRF F+  +C+ F
Sbjct: 508 CIYALFSKDFRFAFKSIICKCF 529


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +1

Query: 349 RLKKSLFYTEPIIYPEP*CTFPSDLNLQTSERQGY-FNNFILKNLWMKSMTKHISI 513
           +L K++  +EP  Y E    FP  L L   + +G  +  F   +   +S TK   I
Sbjct: 582 KLNKAIGGSEPFTYSEKMLGFPERLILPRGKPEGMRYKMFFFLSSMDESNTKSYEI 637


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +1

Query: 349 RLKKSLFYTEPIIYPEP*CTFPSDLNLQTSERQGY-FNNFILKNLWMKSMTKHISI 513
           +L K++  +EP  Y E    FP  L L   + +G  +  F   +   +S TK   I
Sbjct: 582 KLNKAIGGSEPFTYSEKMLGFPERLILPRGKPEGMRYKMFFFLSSMDESNTKSYEI 637


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 599 YIYSYRYLKIMYSIFKTRGNLPH 531
           Y+YS++ L   Y + +   +LPH
Sbjct: 259 YLYSHKLLLNRYYLERLSNDLPH 281


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,084
Number of Sequences: 438
Number of extensions: 3618
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)