Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12n22
(614 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ435338-1|ABD92653.1| 135|Apis mellifera OBP21 protein. 23 3.1
DQ325067-1|ABD14081.1| 152|Apis mellifera complementary sex det... 22 5.5
DQ325066-1|ABD14080.1| 152|Apis mellifera complementary sex det... 22 5.5
DQ325065-1|ABD14079.1| 152|Apis mellifera complementary sex det... 22 5.5
DQ325064-1|ABD14078.1| 152|Apis mellifera complementary sex det... 22 5.5
DQ325063-1|ABD14077.1| 152|Apis mellifera complementary sex det... 22 5.5
DQ325062-1|ABD14076.1| 152|Apis mellifera complementary sex det... 22 5.5
DQ325061-1|ABD14075.1| 152|Apis mellifera complementary sex det... 22 5.5
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 22 5.5
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 22 5.5
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 22 5.5
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 22 5.5
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 22 5.5
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 22 5.5
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 22 5.5
AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 22 5.5
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 22 5.5
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 21 7.2
>DQ435338-1|ABD92653.1| 135|Apis mellifera OBP21 protein.
Length = 135
Score = 22.6 bits (46), Expect = 3.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 347 NESRKIISGLVRISDGDVH 291
NE K+I+ ISD D+H
Sbjct: 95 NEVNKLITECSAISDADIH 113
>DQ325067-1|ABD14081.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 21.8 bits (44), Expect = 5.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 454 IVGNLNGGGENPFRLRFVESSQYFLRP 534
+ G+ + G PF RF+ Y LRP
Sbjct: 116 VPGSRHIGPLTPFPPRFIPPDMYRLRP 142
>DQ325066-1|ABD14080.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 21.8 bits (44), Expect = 5.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 454 IVGNLNGGGENPFRLRFVESSQYFLRP 534
+ G+ + G PF RF+ Y LRP
Sbjct: 116 VPGSRHIGPLTPFPPRFIPPDMYRLRP 142
>DQ325065-1|ABD14079.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 21.8 bits (44), Expect = 5.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 454 IVGNLNGGGENPFRLRFVESSQYFLRP 534
+ G+ + G PF RF+ Y LRP
Sbjct: 116 VPGSRHIGPLTPFPPRFIPPDMYRLRP 142
>DQ325064-1|ABD14078.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 21.8 bits (44), Expect = 5.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 454 IVGNLNGGGENPFRLRFVESSQYFLRP 534
+ G+ + G PF RF+ Y LRP
Sbjct: 116 VPGSRHIGPLTPFPPRFIPPDMYRLRP 142
>DQ325063-1|ABD14077.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 21.8 bits (44), Expect = 5.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 454 IVGNLNGGGENPFRLRFVESSQYFLRP 534
+ G+ + G PF RF+ Y LRP
Sbjct: 116 VPGSRHIGPLTPFPPRFIPPDMYRLRP 142
>DQ325062-1|ABD14076.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 21.8 bits (44), Expect = 5.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 454 IVGNLNGGGENPFRLRFVESSQYFLRP 534
+ G+ + G PF RF+ Y LRP
Sbjct: 116 VPGSRHIGPLTPFPPRFIPPDMYRLRP 142
>DQ325061-1|ABD14075.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 21.8 bits (44), Expect = 5.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 454 IVGNLNGGGENPFRLRFVESSQYFLRP 534
+ G+ + G PF RF+ Y LRP
Sbjct: 116 VPGSRHIGPLTPFPPRFIPPDMYRLRP 142
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 5.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 454 IVGNLNGGGENPFRLRFVESSQYFLRP 534
+ G+ + G PF RF+ Y LRP
Sbjct: 365 VPGSRHIGPLTPFPPRFIPPDMYRLRP 391
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 5.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 454 IVGNLNGGGENPFRLRFVESSQYFLRP 534
+ G+ + G PF RF+ Y LRP
Sbjct: 365 VPGSRHIGPLTPFPPRFIPPDMYRLRP 391
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 5.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 454 IVGNLNGGGENPFRLRFVESSQYFLRP 534
+ G+ + G PF RF+ Y LRP
Sbjct: 365 VPGSRHIGPLTPFPPRFIPPDMYRLRP 391
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 5.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 454 IVGNLNGGGENPFRLRFVESSQYFLRP 534
+ G+ + G PF RF+ Y LRP
Sbjct: 365 VPGSRHIGPLTPFPPRFIPPDMYRLRP 391
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 5.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 454 IVGNLNGGGENPFRLRFVESSQYFLRP 534
+ G+ + G PF RF+ Y LRP
Sbjct: 365 VPGSRHIGPLTPFPPRFIPPDMYRLRP 391
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 5.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 454 IVGNLNGGGENPFRLRFVESSQYFLRP 534
+ G+ + G PF RF+ Y LRP
Sbjct: 365 VPGSRHIGPLTPFPPRFIPPDMYRLRP 391
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 21.8 bits (44), Expect = 5.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 454 IVGNLNGGGENPFRLRFVESSQYFLRP 534
+ G+ + G PF RF+ Y LRP
Sbjct: 364 VPGSRHIGPLTPFPPRFIPPDMYRLRP 390
>AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex
determiner protein.
Length = 385
Score = 21.8 bits (44), Expect = 5.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 454 IVGNLNGGGENPFRLRFVESSQYFLRP 534
+ G+ + G PF RF+ Y LRP
Sbjct: 349 VPGSRHIGPLTPFPPRFIPPDMYRLRP 375
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 21.8 bits (44), Expect = 5.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 454 IVGNLNGGGENPFRLRFVESSQYFLRP 534
+ G+ + G PF RF+ Y LRP
Sbjct: 365 VPGSRHIGPLTPFPPRFIPPDMYRLRP 391
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 21.4 bits (43), Expect = 7.2
Identities = 5/23 (21%), Positives = 15/23 (65%)
Frame = -3
Query: 183 NQLILMNIRFNYFFSEFQSAWND 115
NQ++ N+ + ++++Q W++
Sbjct: 70 NQIMKSNVWLRFIWTDYQLQWDE 92
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,119
Number of Sequences: 438
Number of extensions: 3206
Number of successful extensions: 19
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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