Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12n14
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    26   0.22 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   2.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   2.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   2.7  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   4.8  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +2

Query: 254  QALGFQQKQHFQDHQRDVHCDLGLHDCCLQGRSV 355
            Q+L    +QHF  HQ  V    GL    L G SV
Sbjct: 908  QSLLQSNQQHFPHHQIQVSTSAGLQTIRLSGHSV 941


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -2

Query: 282 CCFCWKPRACSYSEL 238
           C  C KP  C Y ++
Sbjct: 219 CALCEKPEVCDYPDI 233


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -2

Query: 282 CCFCWKPRACSYSEL 238
           C  C KP  C Y ++
Sbjct: 219 CALCEKPEVCDYPDI 233


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -2

Query: 282 CCFCWKPRACSYSEL 238
           C  C KP  C Y ++
Sbjct: 219 CALCEKPEVCDYPDI 233


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = -3

Query: 353 HFDPEGNNHGGPDHN-VRH 300
           +FD + NNH   +HN  RH
Sbjct: 416 NFDNQDNNHYNHNHNQARH 434


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,119
Number of Sequences: 438
Number of extensions: 3385
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)