Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12n09
(678 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1 p... 27 0.22
Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein RJP... 24 1.5
AY078400-1|AAL83703.1| 31|Apis mellifera major royal jelly pro... 24 1.5
DQ325130-1|ABD14144.1| 174|Apis mellifera complementary sex det... 22 4.7
DQ325129-1|ABD14143.1| 174|Apis mellifera complementary sex det... 22 4.7
DQ325128-1|ABD14142.1| 174|Apis mellifera complementary sex det... 22 4.7
DQ325127-1|ABD14141.1| 174|Apis mellifera complementary sex det... 22 4.7
DQ325125-1|ABD14139.1| 174|Apis mellifera complementary sex det... 22 4.7
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 22 6.2
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 21 8.2
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 21 8.2
>Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1
protein.
Length = 402
Score = 26.6 bits (56), Expect = 0.22
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 127 VPMTRIHHILYCLKDKHLMSIKIQYKVLSIRLTKMFWKK 11
+ M I+ LYC KH+ SI+ K+ + K F +K
Sbjct: 206 IVMLGIYCRLYCYAQKHVKSIRAVTKLPDTSMAKSFVRK 244
>Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein
RJP57-1 protein.
Length = 544
Score = 23.8 bits (49), Expect = 1.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 481 ISCKPVTSGAPSHTTKSA 534
I+C+ VTS A +H KSA
Sbjct: 13 IACQDVTSAAVNHQRKSA 30
>AY078400-1|AAL83703.1| 31|Apis mellifera major royal jelly
protein MRJP3 protein.
Length = 31
Score = 23.8 bits (49), Expect = 1.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 481 ISCKPVTSGAPSHTTKSA 534
I+C+ VTS A +H KSA
Sbjct: 13 IACQDVTSAAVNHQRKSA 30
>DQ325130-1|ABD14144.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 22.2 bits (45), Expect = 4.7
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +1
Query: 346 CFNCEYSRETSFPLNILATNVPPF-LRTWV 432
C+N Y + P+ + N PP + +W+
Sbjct: 103 CYNINYIEQIPVPVPVYYGNFPPRPMGSWI 132
>DQ325129-1|ABD14143.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 22.2 bits (45), Expect = 4.7
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +1
Query: 346 CFNCEYSRETSFPLNILATNVPPF-LRTWV 432
C+N Y + P+ + N PP + +W+
Sbjct: 103 CYNINYIEQIPVPVPVYYGNFPPRPMGSWI 132
>DQ325128-1|ABD14142.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 22.2 bits (45), Expect = 4.7
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +1
Query: 346 CFNCEYSRETSFPLNILATNVPPF-LRTWV 432
C+N Y + P+ + N PP + +W+
Sbjct: 103 CYNINYIEQIPVPVPVYYGNFPPRPMGSWI 132
>DQ325127-1|ABD14141.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 22.2 bits (45), Expect = 4.7
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +1
Query: 346 CFNCEYSRETSFPLNILATNVPPF-LRTWV 432
C+N Y + P+ + N PP + +W+
Sbjct: 103 CYNINYIEQIPVPVPVYYGNFPPRPMGSWI 132
>DQ325125-1|ABD14139.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 22.2 bits (45), Expect = 4.7
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +1
Query: 346 CFNCEYSRETSFPLNILATNVPPF-LRTWV 432
C+N Y + P+ + N PP + +W+
Sbjct: 103 CYNINYIEQIPVPVPVYYGNFPPRPMGSWI 132
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 21.8 bits (44), Expect = 6.2
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -2
Query: 227 PLLDHKYFDLDSDFNS 180
PL +H Y +DSD+++
Sbjct: 1329 PLSEHIYSSIDSDYST 1344
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 21.4 bits (43), Expect = 8.2
Identities = 11/35 (31%), Positives = 14/35 (40%)
Frame = +3
Query: 498 YIWCTITYNQICFEALELFYYSICCFLFGNIPLNL 602
Y W TI Y EA + + N+PL L
Sbjct: 158 YAWSTIDYTYDSIEARDSAIFDGDFITENNLPLGL 192
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.4 bits (43), Expect = 8.2
Identities = 8/32 (25%), Positives = 14/32 (43%)
Frame = -1
Query: 414 WRYICGQNIQRKRCFPAVLTIKTVF*TCDSIQ 319
W+ N+ +CF V +K T D ++
Sbjct: 548 WKNAVRHNLSLHKCFMRVENVKGAVWTVDEVE 579
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,323
Number of Sequences: 438
Number of extensions: 4228
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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