Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12n01
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.6  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    23   3.4  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    23   3.4  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   3.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.0  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   7.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.9  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 458 GGVQPPPLHQRLERR 502
           G VQPP  HQ+L+++
Sbjct: 115 GYVQPPTKHQKLDQK 129


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 198 VFIECYYSFFLKYV 157
           VF+ C+  FFL YV
Sbjct: 335 VFVVCWLPFFLMYV 348


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 198 VFIECYYSFFLKYV 157
           VF+ C+  FFL YV
Sbjct: 335 VFVVCWLPFFLMYV 348


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 198 VFIECYYSFFLKYV 157
           VF+ C+  FFL YV
Sbjct: 335 VFVVCWLPFFLMYV 348


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 414 STPVLHAQAGTTRSAGASNHHH 479
           STP+ H+        G + HHH
Sbjct: 445 STPLAHSSYPAAIQIGHTPHHH 466


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 503 GPNTARHKTNGMI 541
           GP T+RH T G++
Sbjct: 78  GPETSRHTTLGLL 90


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 431  RTSGDYEVCGGVQ 469
            R++ DYEVC G Q
Sbjct: 1234 RSNADYEVCIGSQ 1246


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,750
Number of Sequences: 438
Number of extensions: 2873
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)