Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12m24
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    27   2.2  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   3.8  
SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo...    26   6.6  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.7  

>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/67 (22%), Positives = 32/67 (47%)
 Frame = +2

Query: 311 GHLSSFRTSNMYNHGTVDMTVNMEKCNRTISPGINR*GISQQFESAQYKHLYENYYYSSR 490
           G+    R +    H T D+TV++E+ +R  S  + R  + Q+   +    L +   +++ 
Sbjct: 123 GYSDMARANISMTHNTGDLTVSLEEASRLESENVKR--LRQEKRLSLIVDLDQTIIHATV 180

Query: 491 KKTINKW 511
             T+ +W
Sbjct: 181 DPTVGEW 187


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +3

Query: 414 TGKVYHSNSNQPNISTYMKTIIILLERKQLTNGVMY*QFYNYNNNSMNSH 563
           T  + H     PN      ++ IL   K L N   +  F+NYNN++++S+
Sbjct: 459 TNLLMHLEKTSPNSDVDGVSMTILTICKILLNNFDW-NFFNYNNSAIDSY 507


>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
           Agn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/27 (37%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +2

Query: 452 YKHL-YENYYYSSRKKTINKWSDVLTI 529
           Y HL Y+N+ Y S    I++W+++L++
Sbjct: 221 YTHLSYKNWAYKSDWLIIDRWNEMLSV 247


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +1

Query: 91  ILSNVGRQPNLQLTVCLFSTVRL*CNAAYYCIKTSINYNQNSMYTL 228
           ILS + R+ +L++  CL+ T  L   +  Y I  S+  N++  ++L
Sbjct: 145 ILSRIRRKLDLRIITCLWITYFL-SRSVTYSISLSLTMNKHQGHSL 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,896,374
Number of Sequences: 5004
Number of extensions: 56634
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)