Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12m24
(749 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex det... 26 0.43
DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex det... 26 0.43
DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex det... 26 0.43
DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex det... 26 0.43
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 24 1.3
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 24 1.3
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 24 1.3
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 24 1.3
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 24 1.3
DQ257631-1|ABB82366.1| 424|Apis mellifera yellow e3-like protei... 24 1.8
AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9 methylt... 24 1.8
U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive o... 23 2.3
AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin ... 23 2.3
AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein. 23 2.3
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 23 3.1
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 23 4.0
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 23 4.0
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 22 5.3
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 22 5.3
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 22 5.3
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 22 7.1
DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex det... 22 7.1
DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex det... 22 7.1
DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex det... 22 7.1
DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex det... 22 7.1
DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex det... 22 7.1
DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex det... 22 7.1
DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex det... 22 7.1
DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex det... 22 7.1
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 22 7.1
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 22 7.1
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 22 7.1
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 22 7.1
DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex det... 22 7.1
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 22 7.1
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 22 7.1
DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex det... 21 9.3
>DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 25.8 bits (54), Expect = 0.43
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 501 LTNGVMY*QFYNYNNNSMNSHQLLEL 578
L+N Y + NYNNN+ N++ +L
Sbjct: 85 LSNNYKYSNYNNYNNNNYNNNNYKKL 110
>DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 25.8 bits (54), Expect = 0.43
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 501 LTNGVMY*QFYNYNNNSMNSHQLLEL 578
L+N Y + NYNNN+ N++ +L
Sbjct: 85 LSNNYKYSNYNNYNNNNYNNNNYKKL 110
>DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 25.8 bits (54), Expect = 0.43
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 501 LTNGVMY*QFYNYNNNSMNSHQLLEL 578
L+N Y + NYNNN+ N++ +L
Sbjct: 85 LSNNYKYSNYNNYNNNNYNNNNYKKL 110
>DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 25.8 bits (54), Expect = 0.43
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 501 LTNGVMY*QFYNYNNNSMNSHQLLEL 578
L+N Y + NYNNN+ N++ +L
Sbjct: 85 LSNNYKYSNYNNYNNNNYNNNNYKKL 110
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 24.2 bits (50), Expect = 1.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 474 IIILLERKQLTNGVMY*QFYNYNNNSMNSH 563
II L K + N Y YNYNNN+ N++
Sbjct: 81 IISSLSNKTIHNNNNY--KYNYNNNNYNNN 108
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 24.2 bits (50), Expect = 1.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 474 IIILLERKQLTNGVMY*QFYNYNNNSMNSH 563
II L K + N Y YNYNNN+ N++
Sbjct: 81 IISSLSNKTIHNNNNY--KYNYNNNNYNNN 108
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 24.2 bits (50), Expect = 1.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 474 IIILLERKQLTNGVMY*QFYNYNNNSMNSH 563
II L K + N Y YNYNNN+ N++
Sbjct: 81 IISSLSNKTIHNNNNY--KYNYNNNNYNNN 108
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 24.2 bits (50), Expect = 1.3
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 531 YNYNNNSMNSHQLL 572
YNYNNN+ N+++ L
Sbjct: 104 YNYNNNNYNNYKKL 117
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 24.2 bits (50), Expect = 1.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 474 IIILLERKQLTNGVMY*QFYNYNNNSMNSH 563
II L K + N Y YNYNNN+ N++
Sbjct: 314 IISSLSNKTIHNNNNY--KYNYNNNNYNNN 341
>DQ257631-1|ABB82366.1| 424|Apis mellifera yellow e3-like protein
protein.
Length = 424
Score = 23.8 bits (49), Expect = 1.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 287 ISFDFVKSGHLSSFRTSNMYNHGTVDMTVNMEKCN 391
ISF SG L+S T+ G VD V KC+
Sbjct: 379 ISFQKYMSGTLNSNETNFRIQAGLVDELVRGTKCD 413
>AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9
methyltransferase protein.
Length = 683
Score = 23.8 bits (49), Expect = 1.8
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +2
Query: 398 ISPGINR*GISQQFESAQYKHLYENYYYSSRKKTINKWSDVL 523
+ P + Q+F Q + +NY+YS + + SDVL
Sbjct: 117 VQPPTKHQKLDQKFIFPQENNYNDNYFYSKSNGSNSSNSDVL 158
>U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive
opsin protein.
Length = 377
Score = 23.4 bits (48), Expect = 2.3
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = -1
Query: 494 SFEKNNNSFHISAYIGLIRIAVIYLTGLCLVKWCDCISPYLRS 366
+F FHI I + ++ L G C V W S LR+
Sbjct: 48 AFPAPGKHFHIGLAIIYSMLLIMSLVGNCCVIWIFSTSKSLRT 90
>AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin
protein.
Length = 377
Score = 23.4 bits (48), Expect = 2.3
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = -1
Query: 494 SFEKNNNSFHISAYIGLIRIAVIYLTGLCLVKWCDCISPYLRS 366
+F FHI I + ++ L G C V W S LR+
Sbjct: 48 AFPAPGKHFHIGLAIIYSMLLIMSLVGNCCVIWIFSTSKSLRT 90
>AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein.
Length = 615
Score = 23.4 bits (48), Expect = 2.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 167 LHYNLTVENKQTVSCKLGCLPTFD 96
+ YN EN QT + K+G P++D
Sbjct: 535 IQYNTRAENHQTGTAKMG--PSYD 556
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 23.0 bits (47), Expect = 3.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 474 IIILLERKQLTNGVMY*QFYNYNNNSMNSH 563
II L + + N Y YNYNNN+ N++
Sbjct: 81 IISSLSNRTIHNNNNY--KYNYNNNNYNNN 108
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.6 bits (46), Expect = 4.0
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +3
Query: 531 YNYNNNSMNSH 563
YNYNNN+ N++
Sbjct: 96 YNYNNNNYNNN 106
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.6 bits (46), Expect = 4.0
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +3
Query: 531 YNYNNNSMNSH 563
YNYNNN+ N++
Sbjct: 96 YNYNNNNYNNN 106
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 22.2 bits (45), Expect = 5.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 525 QFYNYNNNSMNSHQLL 572
Q+ N NNN SHQ L
Sbjct: 114 QYKNQNNNHYTSHQHL 129
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 22.2 bits (45), Expect = 5.3
Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 3/21 (14%)
Frame = -1
Query: 266 MLCCFVNIY---IIAWSVYIL 213
+L C+ NIY I+AW+++ L
Sbjct: 106 VLSCWTNIYYIIILAWALFYL 126
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 22.2 bits (45), Expect = 5.3
Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 3/21 (14%)
Frame = -1
Query: 266 MLCCFVNIY---IIAWSVYIL 213
+L C+ NIY I+AW+++ L
Sbjct: 159 VLSCWTNIYYIIILAWALFYL 179
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 21.8 bits (44), Expect = 7.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 672 VVTMWTELSEELPCGRYLKS*DM 740
+VTM+T L ++P Y+K+ D+
Sbjct: 242 LVTMFTGLKSDIPPVAYVKALDV 264
>DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 501 LTNGVMY*QFYNYNNNS 551
L+N Y + NYNNN+
Sbjct: 85 LSNNYNYSNYNNYNNNN 101
>DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 501 LTNGVMY*QFYNYNNNS 551
L+N Y + NYNNN+
Sbjct: 85 LSNNYNYSNYNNYNNNN 101
>DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 501 LTNGVMY*QFYNYNNNS 551
L+N Y + NYNNN+
Sbjct: 85 LSNNYNYSNYNNYNNNN 101
>DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 501 LTNGVMY*QFYNYNNNS 551
L+N Y + NYNNN+
Sbjct: 85 LSNNYNYSNYNNYNNNN 101
>DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 501 LTNGVMY*QFYNYNNNS 551
L+N Y + NYNNN+
Sbjct: 85 LSNNYNYSNYNNYNNNN 101
>DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 501 LTNGVMY*QFYNYNNNS 551
L+N Y + NYNNN+
Sbjct: 85 LSNNYNYSNYNNYNNNN 101
>DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 501 LTNGVMY*QFYNYNNNS 551
L+N Y + NYNNN+
Sbjct: 85 LSNNYNYSNYNNYNNNN 101
>DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 501 LTNGVMY*QFYNYNNNS 551
L+N Y + NYNNN+
Sbjct: 85 LSNNYNYSNYNNYNNNN 101
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.8 bits (44), Expect = 7.1
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +3
Query: 531 YNYNNNSMN 557
YNYNNN+ N
Sbjct: 97 YNYNNNNYN 105
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.8 bits (44), Expect = 7.1
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +3
Query: 531 YNYNNNSMN 557
YNYNNN+ N
Sbjct: 97 YNYNNNNYN 105
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.8 bits (44), Expect = 7.1
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +3
Query: 531 YNYNNNSMN 557
YNYNNN+ N
Sbjct: 97 YNYNNNNYN 105
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.8 bits (44), Expect = 7.1
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +3
Query: 531 YNYNNNSMN 557
YNYNNN+ N
Sbjct: 97 YNYNNNNYN 105
>DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.8 bits (44), Expect = 7.1
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +3
Query: 531 YNYNNNSMN 557
YNYNNN+ N
Sbjct: 104 YNYNNNNYN 112
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 21.8 bits (44), Expect = 7.1
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +3
Query: 519 Y*QFYNYNNNSMNSH 563
Y + NYNNN+ N++
Sbjct: 327 YNNYNNYNNNNYNNY 341
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 21.8 bits (44), Expect = 7.1
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +3
Query: 528 FYNYNNNSMNSHQLL 572
+ NYNNN+ N+++ L
Sbjct: 338 YNNYNNNNYNNYKKL 352
>DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 9.3
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +3
Query: 534 NYNNNSMNSHQLL 572
NYNNN+ N+++ L
Sbjct: 95 NYNNNNYNNYKKL 107
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,340
Number of Sequences: 438
Number of extensions: 4071
Number of successful extensions: 50
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -