Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12m22
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual     48   9e-07
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    28   1.4  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   5.6  
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual     26   5.6  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    25   9.9  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   9.9  

>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 48.4 bits (110), Expect = 9e-07
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
 Frame = -1

Query: 644 ITFCFSVSMWIHLNNGDNGLREFLEHIKTISKS---IIIEPQPWKCYRQAQKRIKKTGNT 474
           I    SVS W+HLNN D G+ +F   I ++ ++   +I+EPQ W  Y +A K+I     T
Sbjct: 149 IILALSVSKWVHLNNHDEGIIKFFGKISSLLETNGVLILEPQGWDSYLKAAKKISVFNQT 208


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -1

Query: 521 KCYRQAQKRIKKTGNTFQLYDTLKIRSQVDIFIESILKEHTHIKVYESQNSSWNRKIQSY 342
           K YR++ KRIK      +    +K  + ++   ES  +     KV  S+NSS   ++Q +
Sbjct: 82  KSYRKSVKRIKHDAPQNEDIPVMKGLAPINADTESKAESMAAGKVLGSKNSSQKARLQEW 141

Query: 341 K 339
           K
Sbjct: 142 K 142


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 281 VRFY*KIISIPFFHLFEYL 337
           ++FY K IS+P FH+ E L
Sbjct: 218 IQFYEKSISLPMFHIAENL 236


>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +2

Query: 299 IISIPFFHLFEYLICNFVFFCSMKNFVIHIL 391
           I++I FF+ +   + NFVF  + K ++I+++
Sbjct: 74  IMNIYFFYQYSTYLENFVFARNAKKYIIYLV 104


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/40 (22%), Positives = 22/40 (55%)
 Frame = -1

Query: 479 NTFQLYDTLKIRSQVDIFIESILKEHTHIKVYESQNSSWN 360
           +T +++D  + +SQ+++F+      HT +      + +WN
Sbjct: 220 STARIWDVNRTKSQLEVFVHVPEGSHTGLSRIPVTSCAWN 259


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 391  KYMNHKILHGTEKYKVTN*IFKQMKKRN 308
            K  NH  L  TEK+   N I KQ+ K N
Sbjct: 1665 KLCNHPALILTEKHPKRNAIVKQLAKEN 1692


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,611,552
Number of Sequences: 5004
Number of extensions: 52737
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)