Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12m22
(668 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC053560-1|AAH53560.1| 292|Homo sapiens BCDIN3 domain containin... 102 1e-21
BC018935-1|AAH18935.2| 689|Homo sapiens bin3, bicoid-interactin... 47 7e-05
BC016396-1|AAH16396.1| 220|Homo sapiens BCDIN3 protein protein. 47 7e-05
BC000556-1|AAH00556.2| 689|Homo sapiens bin3, bicoid-interactin... 47 7e-05
AK000264-1|BAA91040.1| 220|Homo sapiens protein ( Homo sapiens ... 47 7e-05
AF264752-1|AAF74767.1| 220|Homo sapiens unknown protein. 47 7e-05
DQ109808-1|AAZ83370.1| 2479|Homo sapiens nephrocystin-6 protein. 30 8.6
BC043398-1|AAH43398.1| 805|Homo sapiens CEP290 protein protein. 30 8.6
AK023677-1|BAB14636.1| 574|Homo sapiens protein ( Homo sapiens ... 30 8.6
AF317887-1|AAK01919.1| 589|Homo sapiens monoclonal antibody 3H1... 30 8.6
>BC053560-1|AAH53560.1| 292|Homo sapiens BCDIN3 domain containing
protein.
Length = 292
Score = 102 bits (245), Expect = 1e-21
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -1
Query: 662 GRSMVDITFCFSVSMWIHLNNGDNGLREFLEHIKTISKSIIIEPQPWKCYRQAQKRIKKT 483
GRS+ DI FC S++MWIHLN+GD+GL EFL H+ ++ +++EPQPWKCYR A +R++K
Sbjct: 154 GRSVFDIGFCMSITMWIHLNHGDHGLWEFLAHLSSLCHYLLVEPQPWKCYRAAARRLRKL 213
Query: 482 G-NTFQLYDTLKIRSQVDIFIESIL-KEHTHIKVYESQNSSWNRKIQSYK 339
G + F + +L IR + I IL ++H + N+SW+R + ++
Sbjct: 214 GLHDFDHFHSLAIRGDMPNQIVQILTQDHGMELICCFGNTSWDRSLLLFR 263
>BC018935-1|AAH18935.2| 689|Homo sapiens bin3, bicoid-interacting
3, homolog (Drosophila) protein.
Length = 689
Score = 46.8 bits (106), Expect = 7e-05
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Frame = -1
Query: 647 DITFCFSVSMWIHLNNGDNGLREFLEHIKTISKS---IIIEPQPWKCYRQAQKRIKKTGN 477
D+ C S++ W+HLN GD GL+ I + +++EPQPW Y KR T
Sbjct: 576 DVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSY---GKRKTLTET 632
Query: 476 TFQLYDTLKIRSQ 438
++ Y ++++ +
Sbjct: 633 IYKNYYRIQLKPE 645
>BC016396-1|AAH16396.1| 220|Homo sapiens BCDIN3 protein protein.
Length = 220
Score = 46.8 bits (106), Expect = 7e-05
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Frame = -1
Query: 647 DITFCFSVSMWIHLNNGDNGLREFLEHIKTISKS---IIIEPQPWKCYRQAQKRIKKTGN 477
D+ C S++ W+HLN GD GL+ I + +++EPQPW Y KR T
Sbjct: 107 DVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSY---GKRKTLTET 163
Query: 476 TFQLYDTLKIRSQ 438
++ Y ++++ +
Sbjct: 164 IYKNYYRIQLKPE 176
>BC000556-1|AAH00556.2| 689|Homo sapiens bin3, bicoid-interacting
3, homolog (Drosophila) protein.
Length = 689
Score = 46.8 bits (106), Expect = 7e-05
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Frame = -1
Query: 647 DITFCFSVSMWIHLNNGDNGLREFLEHIKTISKS---IIIEPQPWKCYRQAQKRIKKTGN 477
D+ C S++ W+HLN GD GL+ I + +++EPQPW Y KR T
Sbjct: 576 DVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSY---GKRKTLTET 632
Query: 476 TFQLYDTLKIRSQ 438
++ Y ++++ +
Sbjct: 633 IYKNYYRIQLKPE 645
>AK000264-1|BAA91040.1| 220|Homo sapiens protein ( Homo sapiens
cDNA FLJ20257 fis, clone COLF7231. ).
Length = 220
Score = 46.8 bits (106), Expect = 7e-05
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Frame = -1
Query: 647 DITFCFSVSMWIHLNNGDNGLREFLEHIKTISKS---IIIEPQPWKCYRQAQKRIKKTGN 477
D+ C S++ W+HLN GD GL+ I + +++EPQPW Y KR T
Sbjct: 107 DVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSY---GKRKTLTET 163
Query: 476 TFQLYDTLKIRSQ 438
++ Y ++++ +
Sbjct: 164 IYKNYYRIQLKPE 176
>AF264752-1|AAF74767.1| 220|Homo sapiens unknown protein.
Length = 220
Score = 46.8 bits (106), Expect = 7e-05
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Frame = -1
Query: 647 DITFCFSVSMWIHLNNGDNGLREFLEHIKTISKS---IIIEPQPWKCYRQAQKRIKKTGN 477
D+ C S++ W+HLN GD GL+ I + +++EPQPW Y KR T
Sbjct: 107 DVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSY---GKRKTLTET 163
Query: 476 TFQLYDTLKIRSQ 438
++ Y ++++ +
Sbjct: 164 IYKNYYRIQLKPE 176
>DQ109808-1|AAZ83370.1| 2479|Homo sapiens nephrocystin-6 protein.
Length = 2479
Score = 29.9 bits (64), Expect = 8.6
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = -1
Query: 512 RQAQKRIKKTGNTFQLYDTLKIRSQVDIFIESILKEHTHIKVYESQNSSWNRKIQSYKLN 333
R+ KR+KK N D + + Q+D E++L Y SQ S N ++ Y
Sbjct: 163 RRENKRLKKK-NEQLCQDIIDYQKQIDSQKETLLSRRGEDSDYRSQLSKKNYELIQYLDE 221
Query: 332 IQT----NEKKEL 306
IQT NEK E+
Sbjct: 222 IQTLTEANEKIEV 234
>BC043398-1|AAH43398.1| 805|Homo sapiens CEP290 protein protein.
Length = 805
Score = 29.9 bits (64), Expect = 8.6
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = -1
Query: 512 RQAQKRIKKTGNTFQLYDTLKIRSQVDIFIESILKEHTHIKVYESQNSSWNRKIQSYKLN 333
R+ KR+KK N D + + Q+D E++L Y SQ S N ++ Y
Sbjct: 163 RRENKRLKKK-NEQLCQDIIDYQKQIDSQKETLLSRRGEDSDYRSQLSKKNYELIQYLDE 221
Query: 332 IQT----NEKKEL 306
IQT NEK E+
Sbjct: 222 IQTLTEANEKIEV 234
>AK023677-1|BAB14636.1| 574|Homo sapiens protein ( Homo sapiens
cDNA FLJ13615 fis, clone PLACE1010896, weakly similar to
NUF1 PROTEIN. ).
Length = 574
Score = 29.9 bits (64), Expect = 8.6
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = -1
Query: 512 RQAQKRIKKTGNTFQLYDTLKIRSQVDIFIESILKEHTHIKVYESQNSSWNRKIQSYKLN 333
R+ KR+KK N D + + Q+D E++L Y SQ S N ++ Y
Sbjct: 163 RRENKRLKKK-NEQLCQDIIDYQKQIDSQKETLLSRRGEDSDYRSQLSKKNYELIQYLDE 221
Query: 332 IQT----NEKKEL 306
IQT NEK E+
Sbjct: 222 IQTLTEANEKIEV 234
>AF317887-1|AAK01919.1| 589|Homo sapiens monoclonal antibody 3H11
antigen protein.
Length = 589
Score = 29.9 bits (64), Expect = 8.6
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = -1
Query: 512 RQAQKRIKKTGNTFQLYDTLKIRSQVDIFIESILKEHTHIKVYESQNSSWNRKIQSYKLN 333
R+ KR+KK N D + + Q+D E++L Y SQ S N ++ Y
Sbjct: 105 RRENKRLKKK-NEQLCQDIIDYQKQIDSQKETLLSRRGEDSDYRSQLSKKNYELIQYLDE 163
Query: 332 IQT----NEKKEL 306
IQT NEK E+
Sbjct: 164 IQTLTEANEKIEV 176
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,898,727
Number of Sequences: 237096
Number of extensions: 1535984
Number of successful extensions: 7017
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7012
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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