Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12m21
         (337 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   5.3  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    20   9.2  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    20   9.2  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    20   9.2  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    20   9.2  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    20   9.2  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    20   9.2  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    20   9.2  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    20   9.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   9.2  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 92  N*NLNY*GEILIYENFILNYE 30
           N N N   + L Y+N+I+N E
Sbjct: 335 NNNYNNYNKKLYYKNYIINIE 355


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 147 YNRNCWHKICY*FKY 191
           YN N + ++CY   Y
Sbjct: 94  YNNNNYKQLCYNINY 108


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 147 YNRNCWHKICY*FKY 191
           YN N + ++CY   Y
Sbjct: 94  YNNNNYKQLCYNINY 108


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 147 YNRNCWHKICY*FKY 191
           YN N + ++CY   Y
Sbjct: 94  YNNNNYKQLCYNINY 108


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 147 YNRNCWHKICY*FKY 191
           YN N + ++CY   Y
Sbjct: 94  YNNNNYKQLCYNINY 108


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 147 YNRNCWHKICY*FKY 191
           YN N + ++CY   Y
Sbjct: 94  YNNNNYKQLCYNINY 108


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 86  NLNY*GEILIYENFILNYE 30
           N N   + L Y+N+I+N E
Sbjct: 96  NYNNYNKKLYYKNYIINIE 114


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 86  NLNY*GEILIYENFILNYE 30
           N NY  + L Y+N+I+N E
Sbjct: 108 NNNY-NKKLYYKNYIINIE 125


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 86  NLNY*GEILIYENFILNYE 30
           N N   + L Y+N+I+N E
Sbjct: 332 NYNNYNKKLYYKNYIINIE 350


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 142 FCITATAGTKFVINLNITKS*LLKFLIL 225
           F + A +G K  + +NI  S  + FL++
Sbjct: 257 FYLPADSGEKIALCINILLSQTMFFLLI 284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,392
Number of Sequences: 438
Number of extensions: 805
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)