Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12m18
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|c...    29   0.47 
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    29   0.47 
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    28   1.1  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   7.7  

>SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 315

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 297 YFQSSSVKKKSLIPL*QTCKYFICFPLL 214
           YF++    +K L PL    KY  CFPLL
Sbjct: 91  YFETPFFMRKELFPLNPHLKYTSCFPLL 118


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 17/64 (26%), Positives = 33/64 (51%)
 Frame = -3

Query: 448  FKRIFHYVVTFF*NTLINEQPKLKNV*DVILKTTKTTYVLSLCLF*KLVLIFSIVFCEKK 269
            +++IF   + +  +    ++ K  N  + ILK + ++YVL+L      +   S+   E+K
Sbjct: 869  YRQIFAIALKYIQHRDFTKESKDSNDTESILKNSYSSYVLALAYSVLQIWFLSLRLTERK 928

Query: 268  KFNP 257
            KF P
Sbjct: 929  KFVP 932


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 270 KSLIPL*QTCKYFICFPLLIYCNFIFLNK 184
           K LIPL QT   F+  P L YC   F++K
Sbjct: 429 KVLIPLHQTKSVFLYHPQLTYCIVQFIDK 457


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +2

Query: 131  LHRFYRLNNNLWHSHQPYLFRNMKLQ*ISKGKQIKYLQVCYNGI 262
            + +FY + + L  +    L  + KLQ  +KG+    L+V ++G+
Sbjct: 1223 MKQFYEIRSTLLQNASGVLVEDPKLQKNAKGQYTSKLKVYFSGL 1266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,679
Number of Sequences: 5004
Number of extensions: 57064
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)