Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12m14
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    30   0.30 
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      27   2.8  
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.6  
SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces pom...    26   6.4  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    26   6.4  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.4  

>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = +3

Query: 465 FLHMCFCFSSCD---CAYLNGIIFSLD*KI*YYENQINDINYFYSNNHTFGSCFNEFTRS 635
           FL +CF FS      C+  NG          YY NQ +++ +    N  + S +NE T  
Sbjct: 10  FLFLCFAFSGVKADGCSEENGY---------YYCNQASEVEF---TNVGYSSTYNEITNM 57

Query: 636 ITHXHRCSTY*KKFG 680
            T    CS+  K +G
Sbjct: 58  DTSSCSCSSTPKSYG 72


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = +3

Query: 156 GRAKTITKKNWF---ASNIYNKIKENGQIVMILDSIFTGATIKTHLYLQN 296
           G   T+  K+W     + +Y  I  NG  +M L S   G    T  YL+N
Sbjct: 395 GHMFTLIGKDWTHAGVAKLYTDITNNGYKIMYLTSRSVGQADSTRHYLRN 444


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 558 FHNIKSFSQAKKLCHLNKHSHS 493
           FH +KS S A+K+ +   HSHS
Sbjct: 32  FHKLKSHSGARKIINEMLHSHS 53


>SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 471 VKKKKLIRTHFFIWLVIARLASHPDNV 391
           V +K LIR  +    VI  LA HPD++
Sbjct: 71  VIRKALIRKEYLWRTVITYLAKHPDSI 97


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 483 KNTCVKKKKLIRTHFFIWLVIARLASHPDNVNK 385
           K    K ++ IRT   +W+  ARL     NV++
Sbjct: 420 KKVLNKARQTIRTSHEVWIAAARLEEQQGNVSR 452


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 447 YESIFFFLHMCFCFSSCDCAYLNGIIFSL 533
           Y S F  LH  F F  C C +L+  +FSL
Sbjct: 146 YFSSFPILHFLFFFFLCVCVFLS-FLFSL 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,760,244
Number of Sequences: 5004
Number of extensions: 53663
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)