Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12m09
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 29 0.44
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 27 2.4
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 27 2.4
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 27 3.1
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 26 4.1
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 26 5.5
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s... 25 7.2
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 25 7.2
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 25 7.2
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 29.5 bits (63), Expect = 0.44
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +3
Query: 438 VLHVLEPLEDVLGDGAQVKELLDGHDSLGYGGRQARVRGP----NGDPTETNRLW 590
++ +++PL + L G + + GY R+AR +GDPTE N+ W
Sbjct: 1846 MIDIVKPLHETLEKGPSTLSEISFAQTFGYDLRKARSYWQKFLQDGDPTELNQSW 1900
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/58 (20%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -1
Query: 461 KRLKDMEDRIAYLQSVSPEYAQFWKT-KADLEEIKSEDRIDYAFSAEDIARKIDQLEK 291
+ +K +RI +L++ + + + ++EE KS +DY + + ++D+L +
Sbjct: 242 QNVKVFTERIRFLENALEKVQREKDSLSTEMEEDKSNKEVDYEYEIRQLQNRLDELSE 299
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -1
Query: 425 LQSVSPEYAQFWKTKADLEEIKSEDRIDYAFSAEDIARKIDQLEKAN 285
LQS++P Y + K DL I E+ + F + + L+K+N
Sbjct: 194 LQSITPNYPTHREDKFDLLIINIEEACTFFFESAHFFAQCSYLKKSN 240
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 26.6 bits (56), Expect = 3.1
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -1
Query: 479 VSKD-IFKRLKDMEDRIAYLQSVSPEYAQFWKTKADLEEIKSEDRIDYAFSAEDIARKID 303
VS+D I + KD+ D +A L +S + WK++ + YAF ED+ R D
Sbjct: 383 VSEDSIAAQTKDVYDEVANL--LSKRGVKEWKSRVS--------KYKYAFELEDVPRTAD 432
Query: 302 QLE 294
LE
Sbjct: 433 YLE 435
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1095
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 540 ARVRGPNGDPTETNRLWTPFV 602
AR+ N DP + N LW P +
Sbjct: 736 ARILASNRDPAKVNELWEPIL 756
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 5.5
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -1
Query: 506 VEKFLNLGPVSKDIFKRLKDMEDRIAYL-QSVSPEYAQFWKTKADLEEIKSEDR 348
V+K + L K+++ +KD + L QS S FW T DLE + E R
Sbjct: 421 VQKKITLRTKWKELYPIIKDDPRYLNLLGQSGSTPLDLFWDTIVDLENMYREKR 474
>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 279
Score = 25.4 bits (53), Expect = 7.2
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +3
Query: 396 LRVFRRHRLQIRDPVLHVLEPLEDV-LGDGAQVKELLDGHDSLGYGGRQARVRGPNGDPT 572
+R R+ ++R P +VL+ + + L +++E L+ D + A+ P G P
Sbjct: 1 MRDLRKLIPRLRGPGTNVLKMKKPLPLHMRTKIREHLNKSDPTVKDDKSAKPELPFGKPA 60
Query: 573 ETNRLWTPFVVDFVY 617
+ W F D+VY
Sbjct: 61 DRVPFWHIFKGDYVY 75
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 186 FTQCSNDIKRMVDFFN 233
F C +DI +VDFFN
Sbjct: 968 FFHCDHDIMELVDFFN 983
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -1
Query: 488 LGPVSKDIFKRLKDMEDR 435
+G DIFKRLK EDR
Sbjct: 387 VGNQEDDIFKRLKQQEDR 404
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,203,494
Number of Sequences: 5004
Number of extensions: 41773
Number of successful extensions: 128
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -