Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12m09
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0847 + 21006842-21007042,21007173-21007261,21012226-210124...    30   1.4  
09_06_0323 - 22337217-22337450,22338263-22339204                       29   2.4  
09_02_0577 - 10862976-10863215,10863653-10863788,10863906-108640...    29   4.3  
09_02_0576 - 10853361-10853600,10854033-10854168,10854285-108544...    29   4.3  
03_02_0140 + 5864612-5864955,5865154-5865381,5865460-5865814,586...    29   4.3  

>10_08_0847 +
           21006842-21007042,21007173-21007261,21012226-21012429,
           21016334-21016568,21016760-21016952,21017472-21017503,
           21019172-21019236,21020766-21020985,21021172-21021370,
           21021728-21021768,21023366-21023404,21023699-21023734,
           21023767-21023798,21024264-21024426,21024602-21024653,
           21024699-21024794,21024911-21025023,21026536-21026615,
           21027343-21027577,21027765-21027890,21027994-21028092
          Length = 849

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -1

Query: 539 LPPSVAERVVAVEKFLNLGPVSKDIFKRLKDMEDR-IAYLQSVSPEYAQFWKTKADLEEI 363
           +P    E    ++   N  P     FK  ++M D  +A  Q  +  +A+ W+   DLE +
Sbjct: 161 IPLHFGEEDPGLQLLDNYDPTRPSRFKNAQEMRDAFVAACQRDAKPFAEKWRLPEDLERL 220

Query: 362 KSED 351
           + +D
Sbjct: 221 RRQD 224


>09_06_0323 - 22337217-22337450,22338263-22339204
          Length = 391

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
 Frame = +3

Query: 468 VLGDGAQVKELLDGHD----SLGYGGRQARVRGPNGD-PTETNRLW 590
           VLGDGA V+ + D HD      G GG Q  V+  +GD   +  R+W
Sbjct: 266 VLGDGAVVEVMWDVHDWWFAGGGGGGAQFMVKARDGDGDGDGGRVW 311


>09_02_0577 -
           10862976-10863215,10863653-10863788,10863906-10864030,
           10864132-10864516,10864571-10864798,10864976-10865319
          Length = 485

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 315 RDVFSRERVIYTILRFYLFQVCLCFP 392
           R +  RE+VIYT++  ++F VC   P
Sbjct: 26  RKIPFREKVIYTVISLFIFLVCSQLP 51


>09_02_0576 -
           10853361-10853600,10854033-10854168,10854285-10854409,
           10854487-10854871,10854934-10855161,10855332-10855675
          Length = 485

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 315 RDVFSRERVIYTILRFYLFQVCLCFP 392
           R +  RE+VIYT++  ++F VC   P
Sbjct: 26  RKIPFREKVIYTVISLFIFLVCSQLP 51


>03_02_0140 +
           5864612-5864955,5865154-5865381,5865460-5865814,
           5865899-5866023,5866150-5866285,5866382-5866621
          Length = 475

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 315 RDVFSRERVIYTILRFYLFQVCLCFP 392
           R +  RE+VIYT++  ++F VC   P
Sbjct: 26  RKIPFREKVIYTVISLFIFLVCSQLP 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,506,002
Number of Sequences: 37544
Number of extensions: 255208
Number of successful extensions: 859
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)