Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12m09
(653 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY047520-1|AAK77252.1| 367|Drosophila melanogaster GH02855p pro... 51 1e-06
AE014297-3727|AAF56405.2| 367|Drosophila melanogaster CG10238-P... 51 1e-06
L23195-1|AAA60323.1| 4639|Drosophila melanogaster cytoplasmic dy... 31 1.4
BT025964-1|ABG02208.1| 1312|Drosophila melanogaster IP16365p pro... 31 1.4
AE014296-904|AAN11615.1| 3388|Drosophila melanogaster CG7507-PB,... 31 1.4
AE014296-903|AAF47942.3| 4639|Drosophila melanogaster CG7507-PA,... 31 1.4
AY113195-1|AAM29200.1| 576|Drosophila melanogaster AT02481p pro... 30 2.4
DQ465527-1|ABF00987.1| 2501|Drosophila melanogaster mushroom bod... 29 5.5
AF209068-1|AAF89163.2| 1871|Drosophila melanogaster Mud protein ... 29 5.5
AF174134-3|AAF88146.1| 2501|Drosophila melanogaster Mud protein ... 29 5.5
AE014298-2023|AAN09584.1| 1871|Drosophila melanogaster CG12047-P... 29 5.5
AE014298-2022|AAF48362.2| 2328|Drosophila melanogaster CG12047-P... 29 5.5
AE014298-2021|AAN09583.2| 2520|Drosophila melanogaster CG12047-P... 29 5.5
AY089384-1|AAL90122.1| 132|Drosophila melanogaster AT20942p pro... 28 9.6
AE013599-919|AAF58905.1| 132|Drosophila melanogaster CG1690-PA ... 28 9.6
>AY047520-1|AAK77252.1| 367|Drosophila melanogaster GH02855p
protein.
Length = 367
Score = 51.2 bits (117), Expect = 1e-06
Identities = 38/135 (28%), Positives = 71/135 (52%), Gaps = 16/135 (11%)
Frame = -1
Query: 650 VKRNDSXGHWKVYKVNNEWGPQTVSFS-----------GVPVGSSDPG--LPPSVAE-RV 513
+K+ S H KV +VNN GPQ + G G +DP + S+ R+
Sbjct: 227 IKQEQSNCHLKVRRVNNRCGPQQMEMRPNYELELNKLMGSRDGQTDPTKEMRKSLPNSRL 286
Query: 512 VAVEKFLNLGPVSKD-IFKRLKDMEDRIAYLQSVSPEYAQFWKTK-ADLEEIKSEDRIDY 339
A+E ++ L +++ IF R+K +E+R+ L+S+SPEY F K + + +E +
Sbjct: 287 QAIESYMGLTTDNEENIFSRIKRVENRLLQLESISPEYRHFTKREPSSMEAAPPKKSRKK 346
Query: 338 AFSAEDIARKIDQLE 294
++SA++++ I +++
Sbjct: 347 SYSAQELSAFIQKIK 361
>AE014297-3727|AAF56405.2| 367|Drosophila melanogaster CG10238-PA
protein.
Length = 367
Score = 51.2 bits (117), Expect = 1e-06
Identities = 38/135 (28%), Positives = 71/135 (52%), Gaps = 16/135 (11%)
Frame = -1
Query: 650 VKRNDSXGHWKVYKVNNEWGPQTVSFS-----------GVPVGSSDPG--LPPSVAE-RV 513
+K+ S H KV +VNN GPQ + G G +DP + S+ R+
Sbjct: 227 IKQEQSNCHLKVRRVNNRCGPQQMEMRPNYELELNKLMGSRDGQTDPTKEMRKSLPNSRL 286
Query: 512 VAVEKFLNLGPVSKD-IFKRLKDMEDRIAYLQSVSPEYAQFWKTK-ADLEEIKSEDRIDY 339
A+E ++ L +++ IF R+K +E+R+ L+S+SPEY F K + + +E +
Sbjct: 287 QAIESYMGLTTDNEENIFSRIKRVENRLLQLESISPEYRHFTKREPSSMEAAPPKKSRKK 346
Query: 338 AFSAEDIARKIDQLE 294
++SA++++ I +++
Sbjct: 347 SYSAQELSAFIQKIK 361
>L23195-1|AAA60323.1| 4639|Drosophila melanogaster cytoplasmic
dynein heavy chian protein.
Length = 4639
Score = 31.1 bits (67), Expect = 1.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 396 LRVFRRHRLQIRDPVLHVLEPLEDVLGDGAQVKE 497
+R FRR Q+R +L VL P + +GD V E
Sbjct: 466 MRKFRRQHEQLRTVILRVLRPTKPAVGDDGNVVE 499
>BT025964-1|ABG02208.1| 1312|Drosophila melanogaster IP16365p
protein.
Length = 1312
Score = 31.1 bits (67), Expect = 1.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 396 LRVFRRHRLQIRDPVLHVLEPLEDVLGDGAQVKE 497
+R FRR Q+R +L VL P + +GD V E
Sbjct: 466 MRKFRRQHEQLRTVILRVLRPTKPAVGDDGNVVE 499
>AE014296-904|AAN11615.1| 3388|Drosophila melanogaster CG7507-PB,
isoform B protein.
Length = 3388
Score = 31.1 bits (67), Expect = 1.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 396 LRVFRRHRLQIRDPVLHVLEPLEDVLGDGAQVKE 497
+R FRR Q+R +L VL P + +GD V E
Sbjct: 466 MRKFRRQHEQLRTVILRVLRPTKPAVGDDGNVVE 499
>AE014296-903|AAF47942.3| 4639|Drosophila melanogaster CG7507-PA,
isoform A protein.
Length = 4639
Score = 31.1 bits (67), Expect = 1.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 396 LRVFRRHRLQIRDPVLHVLEPLEDVLGDGAQVKE 497
+R FRR Q+R +L VL P + +GD V E
Sbjct: 466 MRKFRRQHEQLRTVILRVLRPTKPAVGDDGNVVE 499
>AY113195-1|AAM29200.1| 576|Drosophila melanogaster AT02481p
protein.
Length = 576
Score = 30.3 bits (65), Expect = 2.4
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +3
Query: 429 RDPVLHVLEPLEDVLGDGAQVKELLDGHDSLGYGGRQARVRGPNGD 566
RD +L +L+ + LGD K++LDGH L +Q + P G+
Sbjct: 370 RDAMLMLLQMMPLSLGDSPYKKKILDGHRHLKERQKQQQKLRPGGN 415
>DQ465527-1|ABF00987.1| 2501|Drosophila melanogaster mushroom body
defect protein protein.
Length = 2501
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -1
Query: 539 LPPSVAERVVAVEKFLNLGPVS-KDIFKRLKDMEDRIAYLQSVSPEYAQFWKTKADLEEI 363
L + E + A E+ L++ KD+ +LK +++IA ++ E + + K D+E
Sbjct: 1037 LRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAK 1096
Query: 362 KSE 354
K+E
Sbjct: 1097 KNE 1099
>AF209068-1|AAF89163.2| 1871|Drosophila melanogaster Mud protein
protein.
Length = 1871
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -1
Query: 539 LPPSVAERVVAVEKFLNLGPVS-KDIFKRLKDMEDRIAYLQSVSPEYAQFWKTKADLEEI 363
L + E + A E+ L++ KD+ +LK +++IA ++ E + + K D+E
Sbjct: 1037 LRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAK 1096
Query: 362 KSE 354
K+E
Sbjct: 1097 KNE 1099
>AF174134-3|AAF88146.1| 2501|Drosophila melanogaster Mud protein
protein.
Length = 2501
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -1
Query: 539 LPPSVAERVVAVEKFLNLGPVS-KDIFKRLKDMEDRIAYLQSVSPEYAQFWKTKADLEEI 363
L + E + A E+ L++ KD+ +LK +++IA ++ E + + K D+E
Sbjct: 1037 LRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAK 1096
Query: 362 KSE 354
K+E
Sbjct: 1097 KNE 1099
>AE014298-2023|AAN09584.1| 1871|Drosophila melanogaster CG12047-PC,
isoform C protein.
Length = 1871
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -1
Query: 539 LPPSVAERVVAVEKFLNLGPVS-KDIFKRLKDMEDRIAYLQSVSPEYAQFWKTKADLEEI 363
L + E + A E+ L++ KD+ +LK +++IA ++ E + + K D+E
Sbjct: 1037 LRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAK 1096
Query: 362 KSE 354
K+E
Sbjct: 1097 KNE 1099
>AE014298-2022|AAF48362.2| 2328|Drosophila melanogaster CG12047-PA,
isoform A protein.
Length = 2328
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -1
Query: 539 LPPSVAERVVAVEKFLNLGPVS-KDIFKRLKDMEDRIAYLQSVSPEYAQFWKTKADLEEI 363
L + E + A E+ L++ KD+ +LK +++IA ++ E + + K D+E
Sbjct: 1037 LRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAK 1096
Query: 362 KSE 354
K+E
Sbjct: 1097 KNE 1099
>AE014298-2021|AAN09583.2| 2520|Drosophila melanogaster CG12047-PB,
isoform B protein.
Length = 2520
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -1
Query: 539 LPPSVAERVVAVEKFLNLGPVS-KDIFKRLKDMEDRIAYLQSVSPEYAQFWKTKADLEEI 363
L + E + A E+ L++ KD+ +LK +++IA ++ E + + K D+E
Sbjct: 1037 LRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAK 1096
Query: 362 KSE 354
K+E
Sbjct: 1097 KNE 1099
>AY089384-1|AAL90122.1| 132|Drosophila melanogaster AT20942p
protein.
Length = 132
Score = 28.3 bits (60), Expect = 9.6
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -1
Query: 608 VNNEWGPQTVSFSGVPVGSSDPGLPPSVAERVVAVEKFLN 489
VNN + P T +G+P G+S PP V V+ + +++
Sbjct: 32 VNNWFAPATYGPAGIPFGASPMIPPPPVPNHSVSCQFYMD 71
>AE013599-919|AAF58905.1| 132|Drosophila melanogaster CG1690-PA
protein.
Length = 132
Score = 28.3 bits (60), Expect = 9.6
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -1
Query: 608 VNNEWGPQTVSFSGVPVGSSDPGLPPSVAERVVAVEKFLN 489
VNN + P T +G+P G+S PP V V+ + +++
Sbjct: 32 VNNWFAPATYGPAGIPFGASPMIPPPPVPNHSVSCQFYMD 71
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,707,351
Number of Sequences: 53049
Number of extensions: 431156
Number of successful extensions: 1329
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1327
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2786177250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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