Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12m09
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.       29   2.2  

>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical protein
            T10G3.5b protein.
          Length = 1203

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/63 (23%), Positives = 33/63 (52%)
 Frame = -1

Query: 473  KDIFKRLKDMEDRIAYLQSVSPEYAQFWKTKADLEEIKSEDRIDYAFSAEDIARKIDQLE 294
            +++ K  K+++++   +  ++    QF    AD+++  S++  D     E +  +ID LE
Sbjct: 962  EELEKLQKEIQEKETTIARMTSSKTQFEAMFADVQQTLSKEINDKTEEIERLMERIDSLE 1021

Query: 293  KAN 285
            K N
Sbjct: 1022 KVN 1024


>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical protein
            T10G3.5a protein.
          Length = 1205

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/63 (23%), Positives = 33/63 (52%)
 Frame = -1

Query: 473  KDIFKRLKDMEDRIAYLQSVSPEYAQFWKTKADLEEIKSEDRIDYAFSAEDIARKIDQLE 294
            +++ K  K+++++   +  ++    QF    AD+++  S++  D     E +  +ID LE
Sbjct: 964  EELEKLQKEIQEKETTIARMTSSKTQFEAMFADVQQTLSKEINDKTEEIERLMERIDSLE 1023

Query: 293  KAN 285
            K N
Sbjct: 1024 KVN 1026


>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
          Length = 1205

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/63 (23%), Positives = 33/63 (52%)
 Frame = -1

Query: 473  KDIFKRLKDMEDRIAYLQSVSPEYAQFWKTKADLEEIKSEDRIDYAFSAEDIARKIDQLE 294
            +++ K  K+++++   +  ++    QF    AD+++  S++  D     E +  +ID LE
Sbjct: 964  EELEKLQKEIQEKETTIARMTSSKTQFEAMFADVQQTLSKEINDKTEEIERLMERIDSLE 1023

Query: 293  KAN 285
            K N
Sbjct: 1024 KVN 1026


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,019,587
Number of Sequences: 27780
Number of extensions: 236584
Number of successful extensions: 815
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)