Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12m01
         (400 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0400 + 3017898-3017980,3018785-3018869,3019686-3019775,301...    44   6e-05
02_04_0138 - 20144653-20144685,20144992-20145081,20145405-201454...    36   0.016
03_05_1143 + 30709825-30709926,30710105-30710260,30710356-307104...    29   1.8  
07_03_1013 + 23299569-23300630                                         27   5.5  
01_06_1713 - 39359558-39359590,39360000-39360074,39360437-393606...    27   7.2  
10_08_0909 - 21487512-21487564,21487938-21488292,21489433-214894...    26   9.5  
04_03_0142 + 11773124-11774158                                         26   9.5  

>11_01_0400 +
           3017898-3017980,3018785-3018869,3019686-3019775,
           3019896-3019928
          Length = 96

 Score = 43.6 bits (98), Expect = 6e-05
 Identities = 22/65 (33%), Positives = 32/65 (49%)
 Frame = -1

Query: 313 VDPQQSLREECSQKPDAQNMWAKYQECNDRVNSRSKTAETCEEELIDYVHVLDKCVTKDL 134
           VDP++ L E C  KP       +Y++C  RV       + C  +  DY   +DKCV   L
Sbjct: 34  VDPKKYLEERC--KPQCVKPLYEYEKCVKRVEKDDTGHKHCTGQYFDYWSCIDKCVAPKL 91

Query: 133 FKRLK 119
            ++LK
Sbjct: 92  LEKLK 96


>02_04_0138 -
           20144653-20144685,20144992-20145081,20145405-20145489,
           20146859-20146922,20149388-20149628
          Length = 170

 Score = 35.5 bits (78), Expect = 0.016
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = -1

Query: 310 DPQQSLREECSQKPDAQNMWAKYQECNDRVNSRSKTAETCEEELIDYVHVLDKCVTKDLF 131
           DP+  L +    K   Q  W +YQ+C  R+       + C  +  DY   +DK V + LF
Sbjct: 109 DPKALLEDRSKAKCVYQ--WYEYQKCVKRIEDDETGQKHCTGQYFDYWKCVDKNVAEKLF 166

Query: 130 KRLK 119
             LK
Sbjct: 167 DSLK 170


>03_05_1143 + 30709825-30709926,30710105-30710260,30710356-30710439,
            30710769-30710882,30711019-30711111,30711888-30711977,
            30712157-30712227,30712300-30712374,30712481-30712568,
            30712748-30712806,30712893-30712956,30713030-30713095,
            30713283-30713435,30713522-30713626,30713739-30713974,
            30714104-30714173,30714286-30714339,30714501-30714557,
            30714662-30714741,30716056-30717919
          Length = 1226

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -1

Query: 277  QKPDAQNMWAKYQECNDRVNSRSKTAETCEEELIDYVHVLDKCVTK 140
            ++ D   +   YQEC  +VN + +    CEE L      LD   +K
Sbjct: 1122 EQKDMDCLLVDYQECVFKVNLKEEKIRACEESLQHQTRSLDDMNSK 1167


>07_03_1013 + 23299569-23300630
          Length = 353

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = -1

Query: 313 VDPQQSLREECSQKPDAQNMWAKYQECNDRV-NSRSKTAETCEEE 182
           +D  Q   ++C  +  A N +        +  +   KTAE CEEE
Sbjct: 173 LDEDQKTLQQCQDEEKAPNQYEDEDNTTGQYQDGEQKTAEQCEEE 217


>01_06_1713 -
           39359558-39359590,39360000-39360074,39360437-39360662,
           39360792-39360880,39360960-39361053,39361134-39361318,
           39361415-39361582,39361682-39361822,39362327-39362545,
           39362628-39362744,39363154-39363248,39363662-39363743,
           39363864-39363926,39364157-39364216,39364312-39364476,
           39364574-39364759,39364890-39365180,39365262-39365405,
           39365492-39366172,39367045-39367362
          Length = 1143

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/43 (25%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -1

Query: 298 SLREECSQKPDAQNMW-AKYQECNDRVNSRSKTAETCEEELID 173
           S++++  Q     N+  +K +EC+ ++NS +K  +  +++L D
Sbjct: 857 SIKQDYDQAESELNIGRSKLKECDSQINSMAKEQQKLQQQLSD 899


>10_08_0909 -
           21487512-21487564,21487938-21488292,21489433-21489488,
           21491640-21491778,21493519-21493674,21493983-21494171,
           21494403-21494444,21494445-21494699
          Length = 414

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = -1

Query: 394 CCVIVKDKMSDKFVPVVKAXXXXXXELVDPQQSLREECSQKPDAQNMWAKYQECN 230
           C  ++ +   D  +P++         L+ PQ S  EEC +   A   W  +Q CN
Sbjct: 40  CEEVISNYHGDMAIPIIDLNK-----LLSPQSS-EEECVKLRSACQYWGFFQVCN 88


>04_03_0142 + 11773124-11774158
          Length = 344

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 184 LLHRFLQF*IWSLHDHCTLDI*PTC 258
           LLHR+++  ++ +H +C LD+   C
Sbjct: 144 LLHRYIRLAMYGIHIYCFLDLLLPC 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,865,848
Number of Sequences: 37544
Number of extensions: 142806
Number of successful extensions: 284
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)