Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12l24
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.9  

>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = +1

Query: 172 TCHIKLQQR*NLQHKYILSKIFNPSKAM*ISQVN-EYIIQVTLVN*TFWLFWVRTLTRKH 348
           TC IK+  R N     +   IF   +A   + V    II VT    TFWL W     R  
Sbjct: 245 TCPIKVSWRGNYSCLKV-DLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVM 303

Query: 349 I*ATT 363
           I  TT
Sbjct: 304 IGVTT 308


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = +1

Query: 172 TCHIKLQQR*NLQHKYILSKIFNPSKAM*ISQVN-EYIIQVTLVN*TFWLFWVRTLTRKH 348
           TC IK+  R N     +   IF   +A   + V    II VT    TFWL W     R  
Sbjct: 296 TCPIKVSWRGNYSCLKV-DLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVM 354

Query: 349 I*ATT 363
           I  TT
Sbjct: 355 IGVTT 359


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = +1

Query: 172 TCHIKLQQR*NLQHKYILSKIFNPSKAM*ISQVN-EYIIQVTLVN*TFWLFWVRTLTRKH 348
           TC IK+  R N     +   IF   +A   + V    II VT    TFWL W     R  
Sbjct: 245 TCPIKVSWRGNYSCLKV-DLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVM 303

Query: 349 I*ATT 363
           I  TT
Sbjct: 304 IGVTT 308


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 114 NKYKPSELFKVHTMNCICNNLSHKTSTAIKLA 209
           +K +  EL  +H  NC  N   H T+++   A
Sbjct: 390 SKMEVMELSDLHHPNCKINRKVHHTTSSSSAA 421


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +1

Query: 280 IIQVTLVN*TFWLFWVRTLTRKHI*ATT 363
           II VT    TFWL W     R  I  TT
Sbjct: 312 IILVTSSFITFWLEWNAVPARVMIGVTT 339


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 124 NRVNYSKFIQ*TA 162
           NR+NYS F+  TA
Sbjct: 130 NRLNYSAFVNLTA 142


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = -1

Query: 287 CIMYSFTCDIHMALDGLNIFDKIYLCCKFYRC 192
           CI  S+   ++   DG+      Y CC +  C
Sbjct: 463 CIAISWAFGVNRFYDGIRDMIGYYPCCWWKIC 494


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = -1

Query: 287 CIMYSFTCDIHMALDGLNIFDKIYLCCKFYRC 192
           CI  S+   ++   DG+      Y CC +  C
Sbjct: 516 CIAISWAFGVNRFYDGIRDMIGYYPCCWWKIC 547


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,149
Number of Sequences: 438
Number of extensions: 2887
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)