Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12l12
(378 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U12465-1|AAA51648.1| 123|Homo sapiens ribosomal protein L35 pro... 123 2e-28
CR456877-1|CAG33158.1| 123|Homo sapiens RPL35 protein. 123 2e-28
BC094828-1|AAH94828.1| 123|Homo sapiens ribosomal protein L35 p... 123 2e-28
BC071915-1|AAH71915.1| 123|Homo sapiens ribosomal protein L35 p... 123 2e-28
BC010919-1|AAH10919.1| 123|Homo sapiens RPL35 protein protein. 123 2e-28
BC000348-1|AAH00348.1| 123|Homo sapiens ribosomal protein L35 p... 123 2e-28
AL354928-8|CAI39639.1| 123|Homo sapiens ribosomal protein L35 p... 123 2e-28
AL354928-7|CAI39638.1| 95|Homo sapiens ribosomal protein L35 p... 69 7e-12
AB046409-1|BAB21255.1| 33|Homo sapiens ribosomal protein L35 p... 53 4e-07
BC107597-1|AAI07598.1| 417|Homo sapiens LOC130940 protein protein. 33 0.41
BC052806-1|AAH52806.1| 128|Homo sapiens MRPL55 protein protein. 33 0.41
BC015395-1|AAH15395.1| 255|Homo sapiens LOC130940 protein protein. 33 0.41
AY358771-1|AAQ89131.1| 164|Homo sapiens AAVG5835 protein. 33 0.41
AL136379-5|CAI23117.1| 164|Homo sapiens mitochondrial ribosomal... 33 0.41
AL136379-4|CAI23118.1| 125|Homo sapiens mitochondrial ribosomal... 33 0.41
AL136379-3|CAI23116.1| 128|Homo sapiens mitochondrial ribosomal... 33 0.41
AK058105-1|BAB71668.1| 255|Homo sapiens protein ( Homo sapiens ... 33 0.41
AF458588-1|AAM49716.1| 591|Homo sapiens unknown protein. 33 0.41
AC019044-1|AAX88983.1| 361|Homo sapiens unknown protein. 33 0.41
BC034991-1|AAH34991.1| 495|Homo sapiens meiosis-specific nuclea... 29 3.8
BC031046-1|AAH31046.1| 495|Homo sapiens meiosis-specific nuclea... 29 3.8
AK002084-1|BAA92077.1| 495|Homo sapiens protein ( Homo sapiens ... 29 3.8
AY237538-1|AAP04415.1| 1304|Homo sapiens KIF27C protein. 29 6.6
>U12465-1|AAA51648.1| 123|Homo sapiens ribosomal protein L35
protein.
Length = 123
Score = 123 bits (297), Expect = 2e-28
Identities = 65/111 (58%), Positives = 75/111 (67%)
Frame = -2
Query: 338 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 159
M K+K +LR K L+ LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 158 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKK 6
+Q K NLR YK KKYKPLDLR KKTRAMR+ L KHE +KT+K+ RK+
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKE 111
>CR456877-1|CAG33158.1| 123|Homo sapiens RPL35 protein.
Length = 123
Score = 123 bits (297), Expect = 2e-28
Identities = 65/111 (58%), Positives = 75/111 (67%)
Frame = -2
Query: 338 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 159
M K+K +LR K L+ LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 158 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKK 6
+Q K NLR YK KKYKPLDLR KKTRAMR+ L KHE +KT+K+ RK+
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKE 111
>BC094828-1|AAH94828.1| 123|Homo sapiens ribosomal protein L35
protein.
Length = 123
Score = 123 bits (297), Expect = 2e-28
Identities = 65/111 (58%), Positives = 75/111 (67%)
Frame = -2
Query: 338 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 159
M K+K +LR K L+ LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 158 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKK 6
+Q K NLR YK KKYKPLDLR KKTRAMR+ L KHE +KT+K+ RK+
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKE 111
>BC071915-1|AAH71915.1| 123|Homo sapiens ribosomal protein L35
protein.
Length = 123
Score = 123 bits (297), Expect = 2e-28
Identities = 65/111 (58%), Positives = 75/111 (67%)
Frame = -2
Query: 338 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 159
M K+K +LR K L+ LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 158 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKK 6
+Q K NLR YK KKYKPLDLR KKTRAMR+ L KHE +KT+K+ RK+
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKE 111
>BC010919-1|AAH10919.1| 123|Homo sapiens RPL35 protein protein.
Length = 123
Score = 123 bits (297), Expect = 2e-28
Identities = 65/111 (58%), Positives = 75/111 (67%)
Frame = -2
Query: 338 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 159
M K+K +LR K L+ LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 158 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKK 6
+Q K NLR YK KKYKPLDLR KKTRAMR+ L KHE +KT+K+ RK+
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKE 111
>BC000348-1|AAH00348.1| 123|Homo sapiens ribosomal protein L35
protein.
Length = 123
Score = 123 bits (297), Expect = 2e-28
Identities = 65/111 (58%), Positives = 75/111 (67%)
Frame = -2
Query: 338 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 159
M K+K +LR K L+ LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 158 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKK 6
+Q K NLR YK KKYKPLDLR KKTRAMR+ L KHE +KT+K+ RK+
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKE 111
>AL354928-8|CAI39639.1| 123|Homo sapiens ribosomal protein L35
protein.
Length = 123
Score = 123 bits (297), Expect = 2e-28
Identities = 65/111 (58%), Positives = 75/111 (67%)
Frame = -2
Query: 338 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 159
M K+K +LR K L+ LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 158 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKK 6
+Q K NLR YK KKYKPLDLR KKTRAMR+ L KHE +KT+K+ RK+
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKE 111
>AL354928-7|CAI39638.1| 95|Homo sapiens ribosomal protein L35
protein.
Length = 95
Score = 68.5 bits (160), Expect = 7e-12
Identities = 39/72 (54%), Positives = 44/72 (61%)
Frame = -2
Query: 332 KVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYH 153
K+K +LR K L+ LRVAKVTGG ASKLSKIRVVRK+IARV V +
Sbjct: 2 KIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVIN 61
Query: 152 QKMKVNLRNHYK 117
Q K NLR YK
Sbjct: 62 QTQKENLRKFYK 73
>AB046409-1|BAB21255.1| 33|Homo sapiens ribosomal protein L35
protein.
Length = 33
Score = 52.8 bits (121), Expect = 4e-07
Identities = 27/33 (81%), Positives = 29/33 (87%)
Frame = -2
Query: 248 LRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQ 150
LRVAKVTGG ASKLSKIRVVRK+IARV V +Q
Sbjct: 1 LRVAKVTGGAASKLSKIRVVRKSIARVLTVINQ 33
>BC107597-1|AAI07598.1| 417|Homo sapiens LOC130940 protein protein.
Length = 417
Score = 32.7 bits (71), Expect = 0.41
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 137 NLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRK 21
+++N +N KYKP+D + + K L AK+K RK
Sbjct: 14 HMKNEMRNIKYKPVDYQQLRALTEAKKLASASAKLKIRK 52
>BC052806-1|AAH52806.1| 128|Homo sapiens MRPL55 protein protein.
Length = 128
Score = 32.7 bits (71), Expect = 0.41
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = -2
Query: 218 ASKLSKIRVVRKAIARVY---IVYHQKMKVNLRNHYKNKKYK-PLDLRAKKTRAMRKALT 51
+S+ S RV R+A AR+Y +V +++R + P+DL R L
Sbjct: 35 SSRASLTRVHRQAYARLYPVLLVKQDGSTIHIRYREPRRMLAMPIDLDTLSPEERRARLR 94
Query: 50 KHEAKIKTRKEIRKK 6
K EA++++RKE ++
Sbjct: 95 KREAQLQSRKEYEQE 109
>BC015395-1|AAH15395.1| 255|Homo sapiens LOC130940 protein protein.
Length = 255
Score = 32.7 bits (71), Expect = 0.41
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 137 NLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRK 21
+++N +N KYKP+D + + K L AK+K RK
Sbjct: 14 HMKNEMRNIKYKPVDYQQLRALTEAKKLASASAKLKIRK 52
>AY358771-1|AAQ89131.1| 164|Homo sapiens AAVG5835 protein.
Length = 164
Score = 32.7 bits (71), Expect = 0.41
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = -2
Query: 218 ASKLSKIRVVRKAIARVY---IVYHQKMKVNLRNHYKNKKYK-PLDLRAKKTRAMRKALT 51
+S+ S RV R+A AR+Y +V +++R + P+DL R L
Sbjct: 71 SSRASLTRVHRQAYARLYPVLLVKQDGSTIHIRYREPRRMLAMPIDLDTLSPEERRARLR 130
Query: 50 KHEAKIKTRKEIRKK 6
K EA++++RKE ++
Sbjct: 131 KREAQLQSRKEYEQE 145
>AL136379-5|CAI23117.1| 164|Homo sapiens mitochondrial ribosomal
protein L55 protein.
Length = 164
Score = 32.7 bits (71), Expect = 0.41
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = -2
Query: 218 ASKLSKIRVVRKAIARVY---IVYHQKMKVNLRNHYKNKKYK-PLDLRAKKTRAMRKALT 51
+S+ S RV R+A AR+Y +V +++R + P+DL R L
Sbjct: 71 SSRASLTRVHRQAYARLYPVLLVKQDGSTIHIRYREPRRMLAMPIDLDTLSPEERRARLR 130
Query: 50 KHEAKIKTRKEIRKK 6
K EA++++RKE ++
Sbjct: 131 KREAQLQSRKEYEQE 145
>AL136379-4|CAI23118.1| 125|Homo sapiens mitochondrial ribosomal
protein L55 protein.
Length = 125
Score = 32.7 bits (71), Expect = 0.41
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = -2
Query: 218 ASKLSKIRVVRKAIARVY---IVYHQKMKVNLRNHYKNKKYK-PLDLRAKKTRAMRKALT 51
+S+ S RV R+A AR+Y +V +++R + P+DL R L
Sbjct: 32 SSRASLTRVHRQAYARLYPVLLVKQDGSTIHIRYREPRRMLAMPIDLDTLSPEERRARLR 91
Query: 50 KHEAKIKTRKEIRKK 6
K EA++++RKE ++
Sbjct: 92 KREAQLQSRKEYEQE 106
>AL136379-3|CAI23116.1| 128|Homo sapiens mitochondrial ribosomal
protein L55 protein.
Length = 128
Score = 32.7 bits (71), Expect = 0.41
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = -2
Query: 218 ASKLSKIRVVRKAIARVY---IVYHQKMKVNLRNHYKNKKYK-PLDLRAKKTRAMRKALT 51
+S+ S RV R+A AR+Y +V +++R + P+DL R L
Sbjct: 35 SSRASLTRVHRQAYARLYPVLLVKQDGSTIHIRYREPRRMLAMPIDLDTLSPEERRARLR 94
Query: 50 KHEAKIKTRKEIRKK 6
K EA++++RKE ++
Sbjct: 95 KREAQLQSRKEYEQE 109
>AK058105-1|BAB71668.1| 255|Homo sapiens protein ( Homo sapiens
cDNA FLJ25376 fis, clone TST02010. ).
Length = 255
Score = 32.7 bits (71), Expect = 0.41
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 137 NLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRK 21
+++N +N KYKP+D + + K L AK+K RK
Sbjct: 14 HMKNEMRNIKYKPVDYQQLRALTEAKKLASASAKLKIRK 52
>AF458588-1|AAM49716.1| 591|Homo sapiens unknown protein.
Length = 591
Score = 32.7 bits (71), Expect = 0.41
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 137 NLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRK 21
+++N +N KYKP+D + + K L AK+K RK
Sbjct: 14 HMKNEMRNIKYKPVDYQQLRALTEAKKLASASAKLKIRK 52
>AC019044-1|AAX88983.1| 361|Homo sapiens unknown protein.
Length = 361
Score = 32.7 bits (71), Expect = 0.41
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 137 NLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRK 21
+++N +N KYKP+D + + K L AK+K RK
Sbjct: 5 HMKNEMRNIKYKPVDYQQLRALTEAKKLASASAKLKIRK 43
>BC034991-1|AAH34991.1| 495|Homo sapiens meiosis-specific nuclear
structural 1 protein.
Length = 495
Score = 29.5 bits (63), Expect = 3.8
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = -2
Query: 197 RVVRKAIARVYI--VYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEA--KIK 30
RV RK R+ + M+ ++ +NK+ K L L+ ++ AM A KHE+ K
Sbjct: 50 RVQRKQFLRLLQNEQFELDMEEAIQKAEENKRLKELQLKQEEKLAMELAKLKHESLKDEK 109
Query: 29 TRKEIRKKS 3
R+++R+ S
Sbjct: 110 MRQQVRENS 118
>BC031046-1|AAH31046.1| 495|Homo sapiens meiosis-specific nuclear
structural 1 protein.
Length = 495
Score = 29.5 bits (63), Expect = 3.8
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = -2
Query: 197 RVVRKAIARVYI--VYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEA--KIK 30
RV RK R+ + M+ ++ +NK+ K L L+ ++ AM A KHE+ K
Sbjct: 50 RVQRKQFLRLLQNEQFELDMEEAIQKAEENKRLKELQLKQEEKLAMELAKLKHESLKDEK 109
Query: 29 TRKEIRKKS 3
R+++R+ S
Sbjct: 110 MRQQVRENS 118
>AK002084-1|BAA92077.1| 495|Homo sapiens protein ( Homo sapiens
cDNA FLJ11222 fis, clone PLACE1008177. ).
Length = 495
Score = 29.5 bits (63), Expect = 3.8
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = -2
Query: 197 RVVRKAIARVYI--VYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEA--KIK 30
RV RK R+ + M+ ++ +NK+ K L L+ ++ AM A KHE+ K
Sbjct: 50 RVQRKQFLRLLQNEQFELDMEEAIQKAEENKRLKELQLKQEEKLAMELAKLKHESLKDEK 109
Query: 29 TRKEIRKKS 3
R+++R+ S
Sbjct: 110 MRQQVRENS 118
>AY237538-1|AAP04415.1| 1304|Homo sapiens KIF27C protein.
Length = 1304
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -2
Query: 155 HQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTR 24
+QK+++ + +N+K K LD K+ + KAL KI TR
Sbjct: 850 YQKIQLQRKLREENEKRKQLDAVIKRDQQKIKALNTDSLKISTR 893
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,936,426
Number of Sequences: 237096
Number of extensions: 626284
Number of successful extensions: 1523
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1520
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2536788584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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