Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12l07
(722 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC032324-1|AAH32324.1| 336|Homo sapiens 3-hydroxyisobutyrate de... 241 2e-63
AF529362-1|AAQ09596.1| 336|Homo sapiens NS5ATP1 protein. 241 2e-63
AB050000-1|BAF42045.1| 336|Homo sapiens 3'-hydroxyisobutyrate d... 241 2e-63
BC064940-1|AAH64940.1| 484|Homo sapiens N-PAC protein protein. 92 2e-18
BC047223-1|AAH47223.1| 553|Homo sapiens cytokine-like nuclear f... 92 2e-18
BC032855-1|AAH32855.1| 553|Homo sapiens cytokine-like nuclear f... 92 2e-18
BC003693-1|AAH03693.1| 523|Homo sapiens Similar to RIKEN cDNA 3... 92 2e-18
AY352585-1|AAQ57265.1| 553|Homo sapiens cytokine-like nuclear f... 92 2e-18
AF326966-1|AAK15524.1| 547|Homo sapiens cytokine-like nuclear f... 92 2e-18
AF244907-1|AAQ14242.1| 553|Homo sapiens 3-hydroxyisobutyrate de... 92 2e-18
BC096272-1|AAH96272.1| 560|Homo sapiens HIV-1 Rev binding prote... 33 1.0
BC101805-1|AAI01806.1| 811|Homo sapiens protocadherin gamma sub... 31 4.2
AF152518-1|AAD43778.1| 811|Homo sapiens protocadherin gamma B2 ... 31 4.2
AF152331-1|AAD43725.1| 931|Homo sapiens protocadherin gamma B2 ... 31 4.2
AB025027-1|BAB85656.1| 565|Homo sapiens brain carboxylesterase ... 31 4.2
AK024112-1|BAB14829.1| 305|Homo sapiens protein ( Homo sapiens ... 30 7.3
M58597-1|AAA63173.1| 530|Homo sapiens ELAM-1 ligand fucosyltran... 30 9.6
AB209603-1|BAD92840.1| 337|Homo sapiens amyloid beta (A4) precu... 30 9.6
>BC032324-1|AAH32324.1| 336|Homo sapiens 3-hydroxyisobutyrate
dehydrogenase protein.
Length = 336
Score = 241 bits (590), Expect = 2e-63
Identities = 114/237 (48%), Positives = 163/237 (68%)
Frame = -3
Query: 720 DVVVSILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTD 541
D ++++L ++ ++ Y G +G++ KKGSLLIDSSTIDP V K++ + G F D
Sbjct: 97 DRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMD 156
Query: 540 APVSGGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLM 361
APVSGGV A++ L FM GG +++F + LL MG+ +CG +G+GQ AK+ NNML+
Sbjct: 157 APVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLL 216
Query: 360 GITGMATAECMNMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGG 181
I+ + TAE MN+GI++GL+PK+L +LN SS R WS++ Y PVPG++ PS+ NY GG
Sbjct: 217 AISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGG 276
Query: 180 FKNELMVKDLELASGMALGIRSPIPLGAVATQLYRIVQSRGYGQKDFSFVFQLLKEE 10
F LM KDL LA A +SPI LG++A Q+YR++ ++GY +KDFS VFQ L+EE
Sbjct: 277 FGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREE 333
>AF529362-1|AAQ09596.1| 336|Homo sapiens NS5ATP1 protein.
Length = 336
Score = 241 bits (590), Expect = 2e-63
Identities = 114/237 (48%), Positives = 163/237 (68%)
Frame = -3
Query: 720 DVVVSILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTD 541
D ++++L ++ ++ Y G +G++ KKGSLLIDSSTIDP V K++ + G F D
Sbjct: 97 DRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMD 156
Query: 540 APVSGGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLM 361
APVSGGV A++ L FM GG +++F + LL MG+ +CG +G+GQ AK+ NNML+
Sbjct: 157 APVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLL 216
Query: 360 GITGMATAECMNMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGG 181
I+ + TAE MN+GI++GL+PK+L +LN SS R WS++ Y PVPG++ PS+ NY GG
Sbjct: 217 AISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGG 276
Query: 180 FKNELMVKDLELASGMALGIRSPIPLGAVATQLYRIVQSRGYGQKDFSFVFQLLKEE 10
F LM KDL LA A +SPI LG++A Q+YR++ ++GY +KDFS VFQ L+EE
Sbjct: 277 FGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREE 333
>AB050000-1|BAF42045.1| 336|Homo sapiens 3'-hydroxyisobutyrate
dehydrogenase protein.
Length = 336
Score = 241 bits (590), Expect = 2e-63
Identities = 114/237 (48%), Positives = 163/237 (68%)
Frame = -3
Query: 720 DVVVSILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTD 541
D ++++L ++ ++ Y G +G++ KKGSLLIDSSTIDP V K++ + G F D
Sbjct: 97 DRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMD 156
Query: 540 APVSGGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLM 361
APVSGGV A++ L FM GG +++F + LL MG+ +CG +G+GQ AK+ NNML+
Sbjct: 157 APVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLL 216
Query: 360 GITGMATAECMNMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGG 181
I+ + TAE MN+GI++GL+PK+L +LN SS R WS++ Y PVPG++ PS+ NY GG
Sbjct: 217 AISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGG 276
Query: 180 FKNELMVKDLELASGMALGIRSPIPLGAVATQLYRIVQSRGYGQKDFSFVFQLLKEE 10
F LM KDL LA A +SPI LG++A Q+YR++ ++GY +KDFS VFQ L+EE
Sbjct: 277 FGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREE 333
>BC064940-1|AAH64940.1| 484|Homo sapiens N-PAC protein protein.
Length = 484
Score = 92.3 bits (219), Expect = 2e-18
Identities = 57/232 (24%), Positives = 103/232 (44%)
Frame = -3
Query: 720 DVVVSILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTD 541
D+ + ++ K D+ LG GV+ + G +D ST+D + ++ + + +G F +
Sbjct: 256 DITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLE 315
Query: 540 APVSGGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLM 361
APVSG + + L +A G + +E + MG F G++G+ L NM+
Sbjct: 316 APVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQ 375
Query: 360 GITGMATAECMNMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGG 181
G AE + + G + LLD+LN S + C ++ N+
Sbjct: 376 GSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKC--QNIL-----QGNFKPD 428
Query: 180 FKNELMVKDLELASGMALGIRSPIPLGAVATQLYRIVQSRGYGQKDFSFVFQ 25
F + + KDL LA + + P P+ A A ++Y+ ++ D S V++
Sbjct: 429 FYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 480
>BC047223-1|AAH47223.1| 553|Homo sapiens cytokine-like nuclear
factor n-pac protein.
Length = 553
Score = 92.3 bits (219), Expect = 2e-18
Identities = 57/232 (24%), Positives = 103/232 (44%)
Frame = -3
Query: 720 DVVVSILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTD 541
D+ + ++ K D+ LG GV+ + G +D ST+D + ++ + + +G F +
Sbjct: 325 DITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLE 384
Query: 540 APVSGGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLM 361
APVSG + + L +A G + +E + MG F G++G+ L NM+
Sbjct: 385 APVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQTMGKTSFFLGEVGNAAKMMLIVNMVQ 444
Query: 360 GITGMATAECMNMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGG 181
G AE + + G + LLD+LN S + C ++ N+
Sbjct: 445 GSFMATIAEGLTLAQVTGRSQQTLLDILNQGQLASIFLDQKC--QNIL-----QGNFKPD 497
Query: 180 FKNELMVKDLELASGMALGIRSPIPLGAVATQLYRIVQSRGYGQKDFSFVFQ 25
F + + KDL LA + + P P+ A A ++Y+ ++ D S V++
Sbjct: 498 FYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 549
>BC032855-1|AAH32855.1| 553|Homo sapiens cytokine-like nuclear
factor n-pac protein.
Length = 553
Score = 92.3 bits (219), Expect = 2e-18
Identities = 57/232 (24%), Positives = 103/232 (44%)
Frame = -3
Query: 720 DVVVSILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTD 541
D+ + ++ K D+ LG GV+ + G +D ST+D + ++ + + +G F +
Sbjct: 325 DITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLE 384
Query: 540 APVSGGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLM 361
APVSG + + L +A G + +E + MG F G++G+ L NM+
Sbjct: 385 APVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQ 444
Query: 360 GITGMATAECMNMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGG 181
G AE + + G + LLD+LN S + C ++ N+
Sbjct: 445 GSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKC--QNIL-----QGNFKPD 497
Query: 180 FKNELMVKDLELASGMALGIRSPIPLGAVATQLYRIVQSRGYGQKDFSFVFQ 25
F + + KDL LA + + P P+ A A ++Y+ ++ D S V++
Sbjct: 498 FYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 549
>BC003693-1|AAH03693.1| 523|Homo sapiens Similar to RIKEN cDNA
3930401K13 gene protein.
Length = 523
Score = 92.3 bits (219), Expect = 2e-18
Identities = 57/232 (24%), Positives = 103/232 (44%)
Frame = -3
Query: 720 DVVVSILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTD 541
D+ + ++ K D+ LG GV+ + G +D ST+D + ++ + + +G F +
Sbjct: 295 DITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLE 354
Query: 540 APVSGGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLM 361
APVSG + + L +A G + +E + MG F G++G+ L NM+
Sbjct: 355 APVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQ 414
Query: 360 GITGMATAECMNMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGG 181
G AE + + G + LLD+LN S + C ++ N+
Sbjct: 415 GSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKC--QNIL-----QGNFKPD 467
Query: 180 FKNELMVKDLELASGMALGIRSPIPLGAVATQLYRIVQSRGYGQKDFSFVFQ 25
F + + KDL LA + + P P+ A A ++Y+ ++ D S V++
Sbjct: 468 FYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 519
>AY352585-1|AAQ57265.1| 553|Homo sapiens cytokine-like nuclear
factor n-pac-like protein protein.
Length = 553
Score = 92.3 bits (219), Expect = 2e-18
Identities = 57/232 (24%), Positives = 103/232 (44%)
Frame = -3
Query: 720 DVVVSILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTD 541
D+ + ++ K D+ LG GV+ + G +D ST+D + ++ + + +G F +
Sbjct: 325 DITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLE 384
Query: 540 APVSGGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLM 361
APVSG + + L +A G + +E + MG F G++G+ L NM+
Sbjct: 385 APVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQ 444
Query: 360 GITGMATAECMNMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGG 181
G AE + + G + LLD+LN S + C ++ N+
Sbjct: 445 GSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKC--QNIL-----QGNFKPD 497
Query: 180 FKNELMVKDLELASGMALGIRSPIPLGAVATQLYRIVQSRGYGQKDFSFVFQ 25
F + + KDL LA + + P P+ A A ++Y+ ++ D S V++
Sbjct: 498 FYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 549
>AF326966-1|AAK15524.1| 547|Homo sapiens cytokine-like nuclear
factor n-pac protein.
Length = 547
Score = 92.3 bits (219), Expect = 2e-18
Identities = 57/232 (24%), Positives = 103/232 (44%)
Frame = -3
Query: 720 DVVVSILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTD 541
D+ + ++ K D+ LG GV+ + G +D ST+D + ++ + + +G F +
Sbjct: 319 DITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLE 378
Query: 540 APVSGGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLM 361
APVSG + + L +A G + +E + MG F G++G+ L NM+
Sbjct: 379 APVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQ 438
Query: 360 GITGMATAECMNMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGG 181
G AE + + G + LLD+LN S + C ++ N+
Sbjct: 439 GSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKC--QNIL-----QGNFKPD 491
Query: 180 FKNELMVKDLELASGMALGIRSPIPLGAVATQLYRIVQSRGYGQKDFSFVFQ 25
F + + KDL LA + + P P+ A A ++Y+ ++ D S V++
Sbjct: 492 FYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 543
>AF244907-1|AAQ14242.1| 553|Homo sapiens 3-hydroxyisobutyrate
dehydrogenase-like protein HIBDL protein.
Length = 553
Score = 92.3 bits (219), Expect = 2e-18
Identities = 57/232 (24%), Positives = 103/232 (44%)
Frame = -3
Query: 720 DVVVSILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTD 541
D+ + ++ K D+ LG GV+ + G +D ST+D + ++ + + +G F +
Sbjct: 325 DITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLE 384
Query: 540 APVSGGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLM 361
APVSG + + L +A G + +E + MG F G++G+ L NM+
Sbjct: 385 APVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQ 444
Query: 360 GITGMATAECMNMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGG 181
G AE + + G + LLD+LN S + C ++ N+
Sbjct: 445 GSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKC--QNIL-----QGNFKPD 497
Query: 180 FKNELMVKDLELASGMALGIRSPIPLGAVATQLYRIVQSRGYGQKDFSFVFQ 25
F + + KDL LA + + P P+ A A ++Y+ ++ D S V++
Sbjct: 498 FYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 549
>BC096272-1|AAH96272.1| 560|Homo sapiens HIV-1 Rev binding protein
protein.
Length = 560
Score = 33.1 bits (72), Expect = 1.0
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = +2
Query: 470 SLRPPAMKARVAF*APMTPPDTGASVNPSPFSRAIG--KICLGTFGSIVLESIRSDPFFA 643
S + PA A+ AF P T S P+ F+ A G K + FG + + S+PF
Sbjct: 489 SFQQPAFPAQAAF-----PQQTAFSQQPNGFA-AFGQTKPVVTPFGQVAAAGVSSNPFMT 542
Query: 644 *ATTPSLPRYTSSTTLLL 697
A T P +SST L
Sbjct: 543 GAPTGQFPTGSSSTNPFL 560
>BC101805-1|AAI01806.1| 811|Homo sapiens protocadherin gamma
subfamily B, 2 protein.
Length = 811
Score = 31.1 bits (67), Expect = 4.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 46 FLAVAPGLHDAVELSCDSAQWDRRTN 123
FL + P L A +L CD+A W++ TN
Sbjct: 767 FLNITPELVPAQDLVCDNASWEQNTN 792
>AF152518-1|AAD43778.1| 811|Homo sapiens protocadherin gamma B2
short form protein protein.
Length = 811
Score = 31.1 bits (67), Expect = 4.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 46 FLAVAPGLHDAVELSCDSAQWDRRTN 123
FL + P L A +L CD+A W++ TN
Sbjct: 767 FLNITPELVPAQDLVCDNASWEQNTN 792
>AF152331-1|AAD43725.1| 931|Homo sapiens protocadherin gamma B2
protein.
Length = 931
Score = 31.1 bits (67), Expect = 4.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 46 FLAVAPGLHDAVELSCDSAQWDRRTN 123
FL + P L A +L CD+A W++ TN
Sbjct: 767 FLNITPELVPAQDLVCDNASWEQNTN 792
>AB025027-1|BAB85656.1| 565|Homo sapiens brain carboxylesterase
hBr2 protein.
Length = 565
Score = 31.1 bits (67), Expect = 4.2
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -3
Query: 639 KKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPV 532
K S L+ S N+P+++ P+A EK LG TD PV
Sbjct: 374 KTASSLLWKSYPIANIPEELTPLASEKYLGGTDDPV 409
>AK024112-1|BAB14829.1| 305|Homo sapiens protein ( Homo sapiens
cDNA FLJ14050 fis, clone HEMBA1006796. ).
Length = 305
Score = 30.3 bits (65), Expect = 7.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 562 ERAGIHRCTCIWRSHGCSERYPGLHG 485
E+ G+HR TC +R GC+ PG G
Sbjct: 118 EQPGLHRATCGFRGLGCAPGCPGSGG 143
>M58597-1|AAA63173.1| 530|Homo sapiens ELAM-1 ligand
fucosyltransferase protein.
Length = 530
Score = 29.9 bits (64), Expect = 9.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 24 AGRRTRSLSGRSPWTARCGRAELRQRPMGSANEYPTPCH 140
+GR+ R++ G + W A A R +G A + P P H
Sbjct: 40 SGRKGRAVPGWASWPAHLALAARPARHLGGAGQGPRPLH 78
>AB209603-1|BAD92840.1| 337|Homo sapiens amyloid beta (A4)
precursor protein-binding, family A, member 3 variant
protein.
Length = 337
Score = 29.9 bits (64), Expect = 9.6
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +2
Query: 395 PEPICPQWNCLAPITLRRGRDLSKSSLRPPAMKARVAF*APMTPPDTGASVNPSPFSRAI 574
P P+ P W A ++ + S RPP R A + + P GAS + + R++
Sbjct: 195 PRPLAPGWGGRAALSTAPEQPPPLS--RPPLFSPRSAASSVVASPSVGASASATASLRSM 252
Query: 575 GKI 583
G++
Sbjct: 253 GRV 255
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,143,458
Number of Sequences: 237096
Number of extensions: 3135388
Number of successful extensions: 16747
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 16199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16734
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8511181328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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