Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12l06
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc...    57   3e-09
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    29   0.77 
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    28   1.3  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   4.1  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    26   4.1  
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    26   5.4  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    26   5.4  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    25   7.2  
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|...    25   9.5  
SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr 1...    25   9.5  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   9.5  

>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 27/59 (45%), Positives = 39/59 (66%)
 Frame = -3

Query: 648 EMTGSSSVMLARAAEWNCSIFRKEGLLPMDTVIKDYLKLAVDYDNSPSNTKYCIQNILR 472
           E  G   V++ARAAE N S FR EG L    V +++LK+A++ DN+  NTKYC+  I++
Sbjct: 235 EKYGVDGVLIARAAERNVSCFRIEGPLSSFKVAEEFLKMALEVDNNFGNTKYCLNQIMQ 293


>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 14  IPK*CKHTKAAPCSANFLFFSQNVDVYFFSLNVTIVRNS 130
           I + CKHT  A      +FFSQ V +Y   ++    RNS
Sbjct: 440 IQRVCKHTIFASNPCRIIFFSQEVLIYRDDISGRFQRNS 478


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -3

Query: 588 FRKEGLLPMDTVIKDYLKLAV--DYDNSPSNTKYCIQNILRDLQETPRGRQFLESQTLEQ 415
           + KE  +  D ++  +L+L +  D+     +  +C Q  L+  Q+      FL   +L+ 
Sbjct: 290 YEKEQKIRNDELVYYHLQLTLFSDFQKELGDLVFCTQTSLQQRQKLEEITSFLSFNSLKS 349

Query: 414 ICS 406
           +CS
Sbjct: 350 LCS 352


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 164 LYPFFPAQA*SLLLGRFKSLKFARIKDTFICIASH 268
           LYP     A   L+  FK   F +I D F+C+ S+
Sbjct: 91  LYPII-LNAFEYLIKEFKKDVFLKISDVFVCVYSN 124


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -3

Query: 246 VSFIRANFNDLNLPKSRLHAWAGKNGYSLPKYNTQHIEKLFRTIVTFNEKKYT 88
           + +++  F    +  SR  A AG+N +S  K+ TQ  + LF+ +      KYT
Sbjct: 260 LEYLKIRFALDKISVSRELALAGENMWSSWKHLTQGYDHLFKKVTIVLVGKYT 312


>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 573 LLPMDTVIKDYLKLAVDYDNSPSN 502
           L+  D VIK+YL L+  Y N  SN
Sbjct: 119 LVEFDVVIKEYLNLSEGYRNVISN 142


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 378 LNSILLNPKWSIFALKFDFP 437
           LNSI+LN   S+F   FD+P
Sbjct: 315 LNSIMLNGINSVFQFAFDYP 334


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = -3

Query: 252 MKVSFIRANFNDLNLPKSRLHAWAGK---NGYSLPKYNTQHIEKLFRTIVTFNEKKY 91
           ++++F+ +    L LP   + + AG    N  +LP ++  +  K+F T  T  + K+
Sbjct: 219 LELAFMNSKRKKLELPSLPVLSTAGPSYTNSLALPPFHHHNNYKMFNTTHTLEDDKF 275


>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 330 LATFLESPS--FGTVIVFLNSILLNPKWSIFALKFDFPRTVF 449
           +AT LE P   F     F++  LLNP ++ F L  +FP  +F
Sbjct: 54  IATKLEVPKRWFWHFYAFIS--LLNPLFTFFILNTNFPIPIF 93


>SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 283

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 504 NTKYCIQNILRDLQETPRGRQFLESQTLEQICSIW 400
           N   CI+ +LRD        +F+    L ++C IW
Sbjct: 89  NKGECIELVLRDASNRWLPFEFVMDVFLHELCHIW 123


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 456 PRGRQFLESQTLEQICSIWDLGGYCLEKQ--SQFQKMGIQGRW 334
           P G QFL SQ+ +    +W L  + +EK     F++M    R+
Sbjct: 194 PMG-QFLASQSFDHTLKVWKLSTFGVEKSIAKPFEQMPTGNRF 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,690,204
Number of Sequences: 5004
Number of extensions: 56045
Number of successful extensions: 145
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)