Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12l06
(650 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC006527-1|AAH06527.1| 493|Homo sapiens dihydrouridine synthase... 147 3e-35
AK000406-1|BAA91143.1| 493|Homo sapiens protein ( Homo sapiens ... 147 3e-35
AB101210-1|BAE07219.1| 493|Homo sapiens up-regulated in lung ca... 147 3e-35
BC092442-1|AAH92442.1| 370|Homo sapiens NCOA2 protein protein. 32 2.0
X63753-1|CAA45282.1| 1523|Homo sapiens son-a protein. 31 3.6
AF380182-1|AAL34500.1| 147|Homo sapiens SON DNA binding protein... 31 3.6
AF380179-1|AAL34497.1| 2140|Homo sapiens SON DNA binding protein... 31 3.6
BC015887-1|AAH15887.1| 404|Homo sapiens WD repeat and SOCS box-... 31 4.7
AF229181-1|AAF71302.1| 404|Homo sapiens CS box-containing WD pr... 31 4.7
AF163324-1|AAF80478.1| 404|Homo sapiens WSB-2 protein. 31 4.7
BC012180-1|AAH12180.1| 621|Homo sapiens KIAA1279 protein. 30 6.2
AL359844-4|CAH72378.1| 621|Homo sapiens KIAA1279 protein. 30 6.2
AB033105-1|BAA86593.1| 632|Homo sapiens KIAA1279 protein protein. 30 6.2
AF017336-2|AAB92501.1| 89|Homo sapiens unknown protein. 30 8.2
>BC006527-1|AAH06527.1| 493|Homo sapiens dihydrouridine synthase
2-like, SMM1 homolog (S. cerevisiae) protein.
Length = 493
Score = 147 bits (357), Expect = 3e-35
Identities = 85/214 (39%), Positives = 122/214 (57%), Gaps = 2/214 (0%)
Frame = -3
Query: 648 EMTGSSSVMLARAAEWNCSIFRKEGLLPMDTVIKDYLKLAVDYDNSPSNTKYCIQNILRD 469
+ T +SSVM+ARAA WN SIF KEGL P++ V++ Y++ AV YDN +NTKYC+ +LR+
Sbjct: 232 QATAASSVMVARAAMWNPSIFLKEGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLRE 291
Query: 468 LQETPRGRQFLESQTLEQICSIWDLGGYCLEKQSQFQKMGIQGRWQVCPKQLEPPQKKAK 289
E+P+GR +Q+ +IC + LG + E + Q R + K E + A
Sbjct: 292 QLESPQGRLLHAAQSSREICEAFGLGAFYEETTQELDAQ--QAR--LSAKTSEQTGEPA- 346
Query: 288 HYNEEDLCDAIQMKVSFIRANFNDLNLPKSRLHAWAGKNGYSLPKYNT--QHIEKLFRTI 115
ED I+M V F R + PK L W + + P Y T + +++LF +I
Sbjct: 347 ----EDTSGVIKMAVKFDRRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSI 402
Query: 114 VTFNEKKYTSTFWEKNKKFAEQGAALVCLHHLGI 13
VT E+KY ST W+K+KK AEQ AA+VCL G+
Sbjct: 403 VTVAEQKYQSTLWDKSKKLAEQAAAIVCLRSQGL 436
>AK000406-1|BAA91143.1| 493|Homo sapiens protein ( Homo sapiens
cDNA FLJ20399 fis, clone KAT00581. ).
Length = 493
Score = 147 bits (357), Expect = 3e-35
Identities = 85/214 (39%), Positives = 122/214 (57%), Gaps = 2/214 (0%)
Frame = -3
Query: 648 EMTGSSSVMLARAAEWNCSIFRKEGLLPMDTVIKDYLKLAVDYDNSPSNTKYCIQNILRD 469
+ T +SSVM+ARAA WN SIF KEGL P++ V++ Y++ AV YDN +NTKYC+ +LR+
Sbjct: 232 QATAASSVMVARAAMWNPSIFLKEGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLRE 291
Query: 468 LQETPRGRQFLESQTLEQICSIWDLGGYCLEKQSQFQKMGIQGRWQVCPKQLEPPQKKAK 289
E+P+GR +Q+ +IC + LG + E + Q R + K E + A
Sbjct: 292 QLESPQGRLLHAAQSSREICEAFGLGAFYEETTQELDAQ--QAR--LSAKTSEQTGEPA- 346
Query: 288 HYNEEDLCDAIQMKVSFIRANFNDLNLPKSRLHAWAGKNGYSLPKYNT--QHIEKLFRTI 115
ED I+M V F R + PK L W + + P Y T + +++LF +I
Sbjct: 347 ----EDTSGVIKMAVKFDRRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSI 402
Query: 114 VTFNEKKYTSTFWEKNKKFAEQGAALVCLHHLGI 13
VT E+KY ST W+K+KK AEQ AA+VCL G+
Sbjct: 403 VTVAEQKYQSTLWDKSKKLAEQAAAIVCLRSQGL 436
>AB101210-1|BAE07219.1| 493|Homo sapiens up-regulated in lung
cancer 8 protein.
Length = 493
Score = 147 bits (357), Expect = 3e-35
Identities = 85/214 (39%), Positives = 122/214 (57%), Gaps = 2/214 (0%)
Frame = -3
Query: 648 EMTGSSSVMLARAAEWNCSIFRKEGLLPMDTVIKDYLKLAVDYDNSPSNTKYCIQNILRD 469
+ T +SSVM+ARAA WN SIF KEGL P++ V++ Y++ AV YDN +NTKYC+ +LR+
Sbjct: 232 QATAASSVMVARAAMWNPSIFLKEGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLRE 291
Query: 468 LQETPRGRQFLESQTLEQICSIWDLGGYCLEKQSQFQKMGIQGRWQVCPKQLEPPQKKAK 289
E+P+GR +Q+ +IC + LG + E + Q R + K E + A
Sbjct: 292 QLESPQGRLLHAAQSSREICEAFGLGAFYEETTQELDAQ--QAR--LSAKTSEQTGEPA- 346
Query: 288 HYNEEDLCDAIQMKVSFIRANFNDLNLPKSRLHAWAGKNGYSLPKYNT--QHIEKLFRTI 115
ED I+M V F R + PK L W + + P Y T + +++LF +I
Sbjct: 347 ----EDTSGVIKMAVKFDRRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSI 402
Query: 114 VTFNEKKYTSTFWEKNKKFAEQGAALVCLHHLGI 13
VT E+KY ST W+K+KK AEQ AA+VCL G+
Sbjct: 403 VTVAEQKYQSTLWDKSKKLAEQAAAIVCLRSQGL 436
>BC092442-1|AAH92442.1| 370|Homo sapiens NCOA2 protein protein.
Length = 370
Score = 31.9 bits (69), Expect = 2.0
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 327 CPKQLEP-PQKKAKHYNEEDLCDAIQMKVSFIRANFNDLN 211
CP QLEP P++ + N E I+ I ANFND++
Sbjct: 22 CPDQLEPSPKRNTEKRNREQENKYIEELAELIFANFNDID 61
>X63753-1|CAA45282.1| 1523|Homo sapiens son-a protein.
Length = 1523
Score = 31.1 bits (67), Expect = 3.6
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -3
Query: 129 LFRTIVTFNEKKYTSTFWEKNKKFAEQGAALVCLHHLGIVSED 1
LFR ++ N Y +F NKK A+ AA V L +G+V +D
Sbjct: 1398 LFRVLI--NGSAYQPSFASPNKKHAKATAATVVLQAMGLVPKD 1438
>AF380182-1|AAL34500.1| 147|Homo sapiens SON DNA binding protein
isoform D protein.
Length = 147
Score = 31.1 bits (67), Expect = 3.6
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -3
Query: 129 LFRTIVTFNEKKYTSTFWEKNKKFAEQGAALVCLHHLGIVSED 1
LFR ++ N Y +F NKK A+ AA V L +G+V +D
Sbjct: 93 LFRVLI--NGSAYQPSFASPNKKHAKATAATVVLQAMGLVPKD 133
>AF380179-1|AAL34497.1| 2140|Homo sapiens SON DNA binding protein
isoform A protein.
Length = 2140
Score = 31.1 bits (67), Expect = 3.6
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -3
Query: 129 LFRTIVTFNEKKYTSTFWEKNKKFAEQGAALVCLHHLGIVSED 1
LFR ++ N Y +F NKK A+ AA V L +G+V +D
Sbjct: 2086 LFRVLI--NGSAYQPSFASPNKKHAKATAATVVLQAMGLVPKD 2126
>BC015887-1|AAH15887.1| 404|Homo sapiens WD repeat and SOCS
box-containing 2 protein.
Length = 404
Score = 30.7 bits (66), Expect = 4.7
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -3
Query: 486 QNILRDLQETPRGRQFLESQTLEQICSIWDLGGYCLEKQSQFQKMGIQGRWQVC 325
Q+++RDL TP G L S + ++ IWDL + Q Q + +W C
Sbjct: 153 QDVVRDLSFTPSGSLILVSASRDKTLRIWDLN----KHGKQIQVLSGHLQWVYC 202
>AF229181-1|AAF71302.1| 404|Homo sapiens CS box-containing WD
protein protein.
Length = 404
Score = 30.7 bits (66), Expect = 4.7
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -3
Query: 486 QNILRDLQETPRGRQFLESQTLEQICSIWDLGGYCLEKQSQFQKMGIQGRWQVC 325
Q+++RDL TP G L S + ++ IWDL + Q Q + +W C
Sbjct: 153 QDVVRDLSFTPSGSLILVSASRDKTLRIWDLN----KHGKQIQVLSGHLQWVYC 202
>AF163324-1|AAF80478.1| 404|Homo sapiens WSB-2 protein.
Length = 404
Score = 30.7 bits (66), Expect = 4.7
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -3
Query: 486 QNILRDLQETPRGRQFLESQTLEQICSIWDLGGYCLEKQSQFQKMGIQGRWQVC 325
Q+++RDL TP G L S + ++ IWDL + Q Q + +W C
Sbjct: 153 QDVVRDLSFTPSGSLILVSASRDKTLRIWDLN----KHGKQIQVLSGHLQWVYC 202
>BC012180-1|AAH12180.1| 621|Homo sapiens KIAA1279 protein.
Length = 621
Score = 30.3 bits (65), Expect = 6.2
Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 6/128 (4%)
Frame = -3
Query: 399 DLGGYCLEKQSQFQKMGIQGRWQVCPKQLEPPQKKAKHYNEEDLCDAI---QMKVSFIR- 232
++G L+KQS+ + + R + ++ E +KKA + +LCDAI + KVS++R
Sbjct: 332 NIGELDLDKQSELRAL----RKKELDEE-ESIRKKAVQFGTGELCDAISAVEEKVSYLRP 386
Query: 231 ANFNDLN--LPKSRLHAWAGKNGYSLPKYNTQHIEKLFRTIVTFNEKKYTSTFWEKNKKF 58
+F + + + + K + + Y T HIE + F + T E+ K
Sbjct: 387 LDFEEARELFLLGQHYVFEAKEFFQIDGYVTDHIEVVQDHSALFKVLAFFETDMERRCKM 446
Query: 57 AEQGAALV 34
++ A++
Sbjct: 447 HKRRIAML 454
>AL359844-4|CAH72378.1| 621|Homo sapiens KIAA1279 protein.
Length = 621
Score = 30.3 bits (65), Expect = 6.2
Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 6/128 (4%)
Frame = -3
Query: 399 DLGGYCLEKQSQFQKMGIQGRWQVCPKQLEPPQKKAKHYNEEDLCDAI---QMKVSFIR- 232
++G L+KQS+ + + R + ++ E +KKA + +LCDAI + KVS++R
Sbjct: 332 NIGELDLDKQSELRAL----RKKELDEE-ESIRKKAVQFGTGELCDAISAVEEKVSYLRP 386
Query: 231 ANFNDLN--LPKSRLHAWAGKNGYSLPKYNTQHIEKLFRTIVTFNEKKYTSTFWEKNKKF 58
+F + + + + K + + Y T HIE + F + T E+ K
Sbjct: 387 LDFEEARELFLLGQHYVFEAKEFFQIDGYVTDHIEVVQDHSALFKVLAFFETDMERRCKM 446
Query: 57 AEQGAALV 34
++ A++
Sbjct: 447 HKRRIAML 454
>AB033105-1|BAA86593.1| 632|Homo sapiens KIAA1279 protein protein.
Length = 632
Score = 30.3 bits (65), Expect = 6.2
Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 6/128 (4%)
Frame = -3
Query: 399 DLGGYCLEKQSQFQKMGIQGRWQVCPKQLEPPQKKAKHYNEEDLCDAI---QMKVSFIR- 232
++G L+KQS+ + + R + ++ E +KKA + +LCDAI + KVS++R
Sbjct: 343 NIGELDLDKQSELRAL----RKKELDEE-ESIRKKAVQFGTGELCDAISAVEEKVSYLRP 397
Query: 231 ANFNDLN--LPKSRLHAWAGKNGYSLPKYNTQHIEKLFRTIVTFNEKKYTSTFWEKNKKF 58
+F + + + + K + + Y T HIE + F + T E+ K
Sbjct: 398 LDFEEARELFLLGQHYVFEAKEFFQIDGYVTDHIEVVQDHSALFKVLAFFETDMERRCKM 457
Query: 57 AEQGAALV 34
++ A++
Sbjct: 458 HKRRIAML 465
>AF017336-2|AAB92501.1| 89|Homo sapiens unknown protein.
Length = 89
Score = 29.9 bits (64), Expect = 8.2
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 321 KQLEPPQKKAKHYNEEDL 268
K+ EPP+ K+ HY EEDL
Sbjct: 57 KKTEPPEVKSHHYEEEDL 74
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,787,163
Number of Sequences: 237096
Number of extensions: 1786397
Number of successful extensions: 3703
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3693
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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