Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12k14
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          26   0.42 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      26   0.42 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   2.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.9  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    22   5.1  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    22   6.8  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    22   6.8  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 71 SLCGRNHFSYSGRHTNELSY 12
          ++CG    SY+GRHT ++ +
Sbjct: 13 AICGAQGASYAGRHTADMDF 32


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 71 SLCGRNHFSYSGRHTNELSY 12
          ++CG    SY+GRHT ++ +
Sbjct: 13 AICGAQGASYAGRHTADMDF 32


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 72  QLVRSQPFQLQWKAHKRVILR 10
           QL R QPF L   AH+++  R
Sbjct: 75  QLGRRQPFSLFIPAHRKIAAR 95


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 499 ADVLIGQLETPFETTYTAFKL 437
           AD+++G    PF  T+  FK+
Sbjct: 110 ADLMVGLAVLPFSATWEVFKV 130


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = -1

Query: 529 VEESIELIKNADVLIGQLETPFETTYTAFKLNNGIKLLNAAPALTDIRKILPFCTI 362
           V   +EL +N  +   +  +PF+ T   FKL    +         D RK+   CT+
Sbjct: 37  VSPVVELTENNGLYTLKTTSPFKNTEIKFKLGEEFE-----EETVDGRKVKSVCTL 87


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 20/75 (26%), Positives = 27/75 (36%)
 Frame = -1

Query: 616 GVAQIVVAENGENQIVIVPGANKCLSVQDVEESIELIKNADVLIGQLETPFETTYTAFKL 437
           G  Q V   N E    ++   N   +V     S EL KN D       +   T    FK+
Sbjct: 4   GKFQFVSQNNFEEFAKVLGDQNLVNTVLQPRPSFELSKNGDEWTFTSSSGDNTYTKTFKM 63

Query: 436 NNGIKLLNAAPALTD 392
           N  +      P+L D
Sbjct: 64  N--VPFEETLPSLPD 76


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 20/75 (26%), Positives = 27/75 (36%)
 Frame = -1

Query: 616 GVAQIVVAENGENQIVIVPGANKCLSVQDVEESIELIKNADVLIGQLETPFETTYTAFKL 437
           G  Q V   N E    ++   N   +V     S EL KN D       +   T    FK+
Sbjct: 6   GKFQFVSQNNFEEFAKVLGDQNLVNTVLQPRPSFELSKNGDEWTFTSSSGDNTYTKTFKM 65

Query: 436 NNGIKLLNAAPALTD 392
           N  +      P+L D
Sbjct: 66  N--VPFEETLPSLPD 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,656
Number of Sequences: 438
Number of extensions: 3882
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)