Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12k08
(379 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom... 25 3.0
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 25 3.9
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc... 25 5.2
SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb... 25 5.2
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 25 5.2
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 24 6.9
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 24 6.9
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 24 9.1
SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr ... 24 9.1
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 24 9.1
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 24 9.1
>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 188
Score = 25.4 bits (53), Expect = 3.0
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = +3
Query: 201 WIFKSFNS*GLFKLIQLWDTFDSKLGVVRHCVRGP 305
W S GL++++ +DT +++ G +GP
Sbjct: 85 WFLNSVGPDGLYRMVSAFDTKEAQAGCTFGYTKGP 119
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 25.0 bits (52), Expect = 3.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 266 VKGIPQLDELEKALAVKGLKDPWIRNEAWRYHP 168
+KGI LDEL+KA+ +K + + +R P
Sbjct: 243 IKGILTLDELQKAIKLKQTELDKLERRLYRPSP 275
>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 442
Score = 24.6 bits (51), Expect = 5.2
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 178 LQASFLIHGSLSPLTAKA 231
++ASF+ HG +SPL +A
Sbjct: 18 IEASFVPHGKISPLIKRA 35
>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 376
Score = 24.6 bits (51), Expect = 5.2
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -3
Query: 374 KSSSLIIVCEVNGNLLRMGGHGHGPPYTV 288
K ++L + GN L + H H PP+++
Sbjct: 76 KEAALFVTSGTQGNQLCIRSHLHQPPHSI 104
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1136
Score = 24.6 bits (51), Expect = 5.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 183 SLISDPWIFKSFNS*GLFKLIQLWDTFDSKL 275
+ I DP++ +SF+ L KLI +T D L
Sbjct: 540 AFIRDPYLIESFDEEPLTKLISSLETDDPSL 570
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 24.2 bits (50), Expect = 6.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 377 RKSSSLIIVCEVNGNLLRMGGHGHGPPYTVPHYS 276
R SS + ++N RMGG G PP++ +S
Sbjct: 1277 RPSSGRMHGRDMNRGDSRMGGRGSNPPFSSSDWS 1310
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 24.2 bits (50), Expect = 6.9
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +3
Query: 90 DYCESQSNGKSSKEEFSGSLPASAKSRVISPSLISDP 200
+Y ++QS ++ SLP + ++ P+L+S+P
Sbjct: 511 NYSQAQSPNLATPSPSFSSLPDVSLPPIVKPNLMSEP 547
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 23.8 bits (49), Expect = 9.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 371 SSSLIIVCEVNGNLLRMGGHGHGPPYTV 288
SSSL+I E NG+L M G + P +
Sbjct: 125 SSSLVIEVEENGHLSNMQGSLYETPLRI 152
>SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 268
Score = 23.8 bits (49), Expect = 9.1
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -1
Query: 193 EMRLGDITLDLALAGREPENSSLEDFPL 110
E+ D LD + E+ L+DFPL
Sbjct: 61 ELACNDAVLDKSFLNERLEHCKLQDFPL 88
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 23.8 bits (49), Expect = 9.1
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3
Query: 344 VNGNLLRMGGHGHGPPYTVPHYSQFTVKGIPQ 249
V G + +GG H P + + H+ + GI Q
Sbjct: 388 VEGPIRLLGGLDHSPSHLIGHFYAVCLYGIYQ 419
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 23.8 bits (49), Expect = 9.1
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -1
Query: 250 NWMSLKRP*LLK-DLKIHGSEMRLGDITLDLALAGREPENSSLEDFPLDW 104
NWM ++ K + ++H +L D L+ L R +S+ ++ +DW
Sbjct: 63 NWMEKRKARFKKKETEVHEKPSQLPDSGLNYGLNIRVASSSAADNEIVDW 112
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,753,484
Number of Sequences: 5004
Number of extensions: 36859
Number of successful extensions: 102
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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