Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12k08
(379 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR456924-1|CAG33205.1| 98|Homo sapiens NDUFB3 protein. 69 4e-12
BC018183-1|AAH18183.1| 98|Homo sapiens NADH dehydrogenase (ubi... 69 4e-12
AF047183-1|AAC04268.1| 98|Homo sapiens NADH-ubiquinone oxidore... 69 4e-12
AF035839-1|AAC15590.1| 98|Homo sapiens NADH:ubiquinone oxidore... 69 4e-12
AC007272-1|AAX88972.1| 98|Homo sapiens unknown protein. 69 4e-12
AL079314-1|CAB45280.1| 232|Homo sapiens hypothetical protein, s... 30 2.2
BC064903-1|AAH64903.1| 304|Homo sapiens zinc finger protein 364... 29 3.8
BC054049-1|AAH54049.1| 304|Homo sapiens zinc finger protein 364... 29 3.8
AL390725-6|CAI13717.1| 304|Homo sapiens zinc finger protein 364... 29 3.8
AF542552-1|AAQ09535.1| 304|Homo sapiens zinc finger protein 364... 29 3.8
AF419857-1|AAP97292.1| 304|Homo sapiens hypothetical protein pr... 29 3.8
Z97632-4|CAB10730.1| 755|Homo sapiens HIV-1 Tat specific factor... 29 5.0
U76992-1|AAB18823.1| 754|Homo sapiens Tat-SF1 protein. 29 5.0
BT006886-1|AAP35532.1| 755|Homo sapiens HIV TAT specific factor... 29 5.0
BC009896-1|AAH09896.1| 755|Homo sapiens HIV-1 Tat specific fact... 29 5.0
AB209303-1|BAD92540.1| 758|Homo sapiens HIV TAT specific factor... 29 6.6
M99435-1|AAA61192.1| 770|Homo sapiens transducin-like enhancer ... 28 8.8
BC015747-1|AAH15747.1| 770|Homo sapiens transducin-like enhance... 28 8.8
BC010100-1|AAH10100.1| 770|Homo sapiens transducin-like enhance... 28 8.8
AL365190-3|CAI14978.1| 242|Homo sapiens transducin-like enhance... 28 8.8
AL365190-2|CAI14977.1| 770|Homo sapiens transducin-like enhance... 28 8.8
AL365190-1|CAI14976.1| 144|Homo sapiens transducin-like enhance... 28 8.8
AL353682-2|CAI12596.1| 242|Homo sapiens transducin-like enhance... 28 8.8
AL353682-1|CAI12595.1| 770|Homo sapiens transducin-like enhance... 28 8.8
AB209854-1|BAD93091.1| 636|Homo sapiens transducin-like enhance... 28 8.8
>CR456924-1|CAG33205.1| 98|Homo sapiens NDUFB3 protein.
Length = 98
Score = 69.3 bits (162), Expect = 4e-12
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = -3
Query: 317 GHGHGP-PYTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIRNEAWRYHPGFGTRWQRA 141
GH HG +P Y Q+ ++G P L+ ++K LA KGL+DPW RNEAWRY GF +
Sbjct: 6 GHEHGHHKMELPDYRQWKIEGTP-LETIQKKLAAKGLRDPWGRNEAWRYMGGF-AKSVSF 63
Query: 140 RKFFFRGFPIGLGLTVITVALDKFM 66
FF+GF G V+ V + ++
Sbjct: 64 SDVFFKGFKWGFAAFVVAVGAEYYL 88
>BC018183-1|AAH18183.1| 98|Homo sapiens NADH dehydrogenase
(ubiquinone) 1 beta subcomplex, 3, 12kDa protein.
Length = 98
Score = 69.3 bits (162), Expect = 4e-12
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = -3
Query: 317 GHGHGP-PYTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIRNEAWRYHPGFGTRWQRA 141
GH HG +P Y Q+ ++G P L+ ++K LA KGL+DPW RNEAWRY GF +
Sbjct: 6 GHEHGHHKMELPDYRQWKIEGTP-LETIQKKLAAKGLRDPWGRNEAWRYMGGF-AKSVSF 63
Query: 140 RKFFFRGFPIGLGLTVITVALDKFM 66
FF+GF G V+ V + ++
Sbjct: 64 SDVFFKGFKWGFAAFVVAVGAEYYL 88
>AF047183-1|AAC04268.1| 98|Homo sapiens NADH-ubiquinone
oxidoreductase subunit CI-B12 protein.
Length = 98
Score = 69.3 bits (162), Expect = 4e-12
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = -3
Query: 317 GHGHGP-PYTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIRNEAWRYHPGFGTRWQRA 141
GH HG +P Y Q+ ++G P L+ ++K LA KGL+DPW RNEAWRY GF +
Sbjct: 6 GHEHGHHKMELPDYRQWKIEGTP-LETIQKKLAAKGLRDPWGRNEAWRYMGGF-AKSVSF 63
Query: 140 RKFFFRGFPIGLGLTVITVALDKFM 66
FF+GF G V+ V + ++
Sbjct: 64 SDVFFKGFKWGFAAFVVAVGAEYYL 88
>AF035839-1|AAC15590.1| 98|Homo sapiens NADH:ubiquinone
oxidoreductase B12 subunit protein.
Length = 98
Score = 69.3 bits (162), Expect = 4e-12
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = -3
Query: 317 GHGHGP-PYTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIRNEAWRYHPGFGTRWQRA 141
GH HG +P Y Q+ ++G P L+ ++K LA KGL+DPW RNEAWRY GF +
Sbjct: 6 GHEHGHHKMELPDYRQWKIEGTP-LETIQKKLAAKGLRDPWGRNEAWRYMGGF-AKSVSF 63
Query: 140 RKFFFRGFPIGLGLTVITVALDKFM 66
FF+GF G V+ V + ++
Sbjct: 64 SDVFFKGFKWGFAAFVVAVGAEYYL 88
>AC007272-1|AAX88972.1| 98|Homo sapiens unknown protein.
Length = 98
Score = 69.3 bits (162), Expect = 4e-12
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = -3
Query: 317 GHGHGP-PYTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIRNEAWRYHPGFGTRWQRA 141
GH HG +P Y Q+ ++G P L+ ++K LA KGL+DPW RNEAWRY GF +
Sbjct: 6 GHEHGHHKMELPDYRQWKIEGTP-LETIQKKLAAKGLRDPWGRNEAWRYMGGF-AKSVSF 63
Query: 140 RKFFFRGFPIGLGLTVITVALDKFM 66
FF+GF G V+ V + ++
Sbjct: 64 SDVFFKGFKWGFAAFVVAVGAEYYL 88
>AL079314-1|CAB45280.1| 232|Homo sapiens hypothetical protein,
similar to (U06944) PRAJA1 [Mus musculus] protein.
Length = 232
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 87 CDYCESQSNGKSSKEEFSGSLPASAKSRVISPSLISDPWIF 209
C C NG+ S + S S ASA +R + S ++D W F
Sbjct: 193 CPVCRKSLNGEDSTRQ-SQSTEASASNRFSNDSQLNDRWTF 232
>BC064903-1|AAH64903.1| 304|Homo sapiens zinc finger protein 364
protein.
Length = 304
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 87 CDYCESQSNGKSSKEEFSGSLPASAKSRVISPSLISDPWIF 209
C C NG+ S + S S ASA +R + S + D W F
Sbjct: 265 CPVCRKSLNGEDSTRQ-SQSTEASASNRFSNDSQLHDRWTF 304
>BC054049-1|AAH54049.1| 304|Homo sapiens zinc finger protein 364
protein.
Length = 304
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 87 CDYCESQSNGKSSKEEFSGSLPASAKSRVISPSLISDPWIF 209
C C NG+ S + S S ASA +R + S + D W F
Sbjct: 265 CPVCRKSLNGEDSTRQ-SQSTEASASNRFSNDSQLHDRWTF 304
>AL390725-6|CAI13717.1| 304|Homo sapiens zinc finger protein 364
protein.
Length = 304
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 87 CDYCESQSNGKSSKEEFSGSLPASAKSRVISPSLISDPWIF 209
C C NG+ S + S S ASA +R + S + D W F
Sbjct: 265 CPVCRKSLNGEDSTRQ-SQSTEASASNRFSNDSQLHDRWTF 304
>AF542552-1|AAQ09535.1| 304|Homo sapiens zinc finger protein 364
protein.
Length = 304
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 87 CDYCESQSNGKSSKEEFSGSLPASAKSRVISPSLISDPWIF 209
C C NG+ S + S S ASA +R + S + D W F
Sbjct: 265 CPVCRKSLNGEDSTRQ-SQSTEASASNRFSNDSQLHDRWTF 304
>AF419857-1|AAP97292.1| 304|Homo sapiens hypothetical protein
protein.
Length = 304
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 87 CDYCESQSNGKSSKEEFSGSLPASAKSRVISPSLISDPWIF 209
C C NG+ S + S S ASA +R + S + D W F
Sbjct: 265 CPVCRKSLNGEDSTRQ-SQSTEASASNRFSNDSQLHDRWTF 304
>Z97632-4|CAB10730.1| 755|Homo sapiens HIV-1 Tat specific factor 1
protein.
Length = 755
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -1
Query: 223 LLKDLKIHGSEMRLGDITLDLALAGREPENSSLED 119
L KDL GSE L + LD L + ENS ED
Sbjct: 570 LEKDLDEEGSEKELHENVLDKELEENDSENSEFED 604
>U76992-1|AAB18823.1| 754|Homo sapiens Tat-SF1 protein.
Length = 754
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -1
Query: 223 LLKDLKIHGSEMRLGDITLDLALAGREPENSSLED 119
L KDL GSE L + LD L + ENS ED
Sbjct: 569 LEKDLDEEGSEKELHENVLDKELEENDSENSEFED 603
>BT006886-1|AAP35532.1| 755|Homo sapiens HIV TAT specific factor 1
protein.
Length = 755
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -1
Query: 223 LLKDLKIHGSEMRLGDITLDLALAGREPENSSLED 119
L KDL GSE L + LD L + ENS ED
Sbjct: 570 LEKDLDEEGSEKELHENVLDKELEENDSENSEFED 604
>BC009896-1|AAH09896.1| 755|Homo sapiens HIV-1 Tat specific factor
1 protein.
Length = 755
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -1
Query: 223 LLKDLKIHGSEMRLGDITLDLALAGREPENSSLED 119
L KDL GSE L + LD L + ENS ED
Sbjct: 570 LEKDLDEEGSEKELHENVLDKELEENDSENSEFED 604
>AB209303-1|BAD92540.1| 758|Homo sapiens HIV TAT specific factor 1
variant protein.
Length = 758
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -1
Query: 223 LLKDLKIHGSEMRLGDITLDLALAGREPENSSLED 119
L KDL GSE L + LD L + ENS ED
Sbjct: 573 LEKDLDEEGSEKELHENILDKELEENDSENSEFED 607
>M99435-1|AAA61192.1| 770|Homo sapiens transducin-like enhancer
protein protein.
Length = 770
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -3
Query: 314 HGHGPPYTV-PHYSQFTVKGIPQL 246
HGHGPP + PH S GIP L
Sbjct: 135 HGHGPPVPLTPHPSGLQPPGIPPL 158
>BC015747-1|AAH15747.1| 770|Homo sapiens transducin-like enhancer
of split 1 (E(sp1) homolog, Drosophila) protein.
Length = 770
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -3
Query: 314 HGHGPPYTV-PHYSQFTVKGIPQL 246
HGHGPP + PH S GIP L
Sbjct: 135 HGHGPPVPLTPHPSGLQPPGIPPL 158
>BC010100-1|AAH10100.1| 770|Homo sapiens transducin-like enhancer
of split 1 (E(sp1) homolog, Drosophila) protein.
Length = 770
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -3
Query: 314 HGHGPPYTV-PHYSQFTVKGIPQL 246
HGHGPP + PH S GIP L
Sbjct: 135 HGHGPPVPLTPHPSGLQPPGIPPL 158
>AL365190-3|CAI14978.1| 242|Homo sapiens transducin-like enhancer
of split 1 (E(sp1) homolog, Drosophila) protein.
Length = 242
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -3
Query: 314 HGHGPPYTV-PHYSQFTVKGIPQL 246
HGHGPP + PH S GIP L
Sbjct: 145 HGHGPPVPLTPHPSGLQPPGIPPL 168
>AL365190-2|CAI14977.1| 770|Homo sapiens transducin-like enhancer
of split 1 (E(sp1) homolog, Drosophila) protein.
Length = 770
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -3
Query: 314 HGHGPPYTV-PHYSQFTVKGIPQL 246
HGHGPP + PH S GIP L
Sbjct: 135 HGHGPPVPLTPHPSGLQPPGIPPL 158
>AL365190-1|CAI14976.1| 144|Homo sapiens transducin-like enhancer
of split 1 (E(sp1) homolog, Drosophila) protein.
Length = 144
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -3
Query: 314 HGHGPPYTV-PHYSQFTVKGIPQL 246
HGHGPP + PH S GIP L
Sbjct: 79 HGHGPPVPLTPHPSGLQPPGIPPL 102
>AL353682-2|CAI12596.1| 242|Homo sapiens transducin-like enhancer
of split 1 (E(sp1) homolog, Drosophila) protein.
Length = 242
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -3
Query: 314 HGHGPPYTV-PHYSQFTVKGIPQL 246
HGHGPP + PH S GIP L
Sbjct: 145 HGHGPPVPLTPHPSGLQPPGIPPL 168
>AL353682-1|CAI12595.1| 770|Homo sapiens transducin-like enhancer
of split 1 (E(sp1) homolog, Drosophila) protein.
Length = 770
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -3
Query: 314 HGHGPPYTV-PHYSQFTVKGIPQL 246
HGHGPP + PH S GIP L
Sbjct: 135 HGHGPPVPLTPHPSGLQPPGIPPL 158
>AB209854-1|BAD93091.1| 636|Homo sapiens transducin-like enhancer
protein 1 variant protein.
Length = 636
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -3
Query: 314 HGHGPPYTV-PHYSQFTVKGIPQL 246
HGHGPP + PH S GIP L
Sbjct: 162 HGHGPPVPLTPHPSGLQPPGIPPL 185
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,723,562
Number of Sequences: 237096
Number of extensions: 1575870
Number of successful extensions: 7565
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 7422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7565
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2536788584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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