Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12k08
         (379 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    25   0.39 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    24   0.68 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   1.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   4.8  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   6.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          20   8.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      20   8.4  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 24.6 bits (51), Expect = 0.39
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 306 WAPVHSASLLPVYCQ 262
           WAP H+  LL VY Q
Sbjct: 298 WAPFHAQRLLAVYAQ 312


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.8 bits (49), Expect = 0.68
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 306 WAPVHSASLLPVYCQ 262
           WAP H+  LL VY Q
Sbjct: 283 WAPFHTQRLLYVYAQ 297


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
 Frame = -3

Query: 173 HPGFGTRWQRARKFFFR--GFPIGLGLTVITVALDKFMGGGEXWAWSRARGRAIDFV 9
           HPGF  +  RAR+ F     F    G  + TV   +     E   W+R     +D V
Sbjct: 199 HPGFADKEYRARRKFIAEIAFAYRYGDAIPTVPYTE----TETETWTRVFNTLVDLV 251


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -3

Query: 317 GHGHGPPYTVPHY 279
           GHGH   +  PH+
Sbjct: 420 GHGHSHIHATPHH 432



 Score = 20.6 bits (41), Expect = 6.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 120 SSKEEFSGSLPASAKSRVISPSLISDPWIFKS 215
           S+ E F G+ P +   +     L   P IFKS
Sbjct: 115 SADEGFDGTYPTNVVVKNNGTCLYVPPGIFKS 146


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 306 WAPVHSASLLPVY 268
           WAP H   LL VY
Sbjct: 273 WAPFHVQRLLYVY 285


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +3

Query: 75  IQSHCDYCESQSNGKSSKEEFSGSLPASAKSR 170
           + ++ D C++  N   + E F G +    K+R
Sbjct: 461 LYTYFDKCDTLINNAVAVENFKGGMYLRLKAR 492


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +3

Query: 75  IQSHCDYCESQSNGKSSKEEFSGSLPASAKSR 170
           + ++ D C++  N   + E F G +    K+R
Sbjct: 461 LYTYFDKCDTLINNAVAVENFKGGMYLRLKAR 492


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,836
Number of Sequences: 438
Number of extensions: 2603
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)