Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12k07
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces...    31   0.21 
SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.85 
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    27   2.0  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    26   4.5  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    26   4.5  
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po...    26   4.5  
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c...    25   7.9  

>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 209 GVRFVLNYPDLLSIYRAANYRLQRQR 132
           G RF + YPDL+   RA  YR++R R
Sbjct: 423 GYRFNVFYPDLIGTGRAPTYRIERTR 448


>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 210

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
 Frame = -2

Query: 558 STKLNETITISAPYLRTKYSHHYLYTPAGDVIDLDSVESIQSNIKND---FDDIRINVTS 388
           +T++ ET       L     HHYL   A DV+ +DS      N+  +   +D  R+ +T+
Sbjct: 114 TTRIRETFIDIIKALYVNEKHHYLPKQAIDVV-IDSYNGGCVNLPPETLFYDMQRLWLTA 172

Query: 387 LRRYSSELITLGPLIESDHGNWV 319
           +  Y ++      L+  DHG  V
Sbjct: 173 MNTYENQKPPNLKLLLHDHGTVV 195


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
            Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = +1

Query: 481  CVQIVM*VFRSEIRCRYSYGFVELSRDKQRLQLYFGVVMNKISIVERYTAARKNNSKYDD 660
            C +++  V +  + C Y+YG +    D  R Q+ FGV      IV+   A R+  ++YD+
Sbjct: 1016 CPRLIKAVKQLGLSC-YTYGVLNNDVDNVRRQVRFGV---DAVIVDNVLAIRRALNQYDE 1071


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +1

Query: 541 FVELSRDKQRLQLYFGVVMNKISIVERYTAARKNNSKYDDDETSTAHD 684
           F +LS D+ R +L   + + K SIVERY  ++KN++  +    S   D
Sbjct: 512 FADLSLDEIREELDARLPLLK-SIVERYLISKKNDNNNESIHISRLLD 558



 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -2

Query: 633 SSSVPFDNRYLVHNDTKIELEPLLISTKLNETITISAPYLRTK 505
           ++S PF   YL++  TK++LE    +   N +  IS+P +  K
Sbjct: 29  TNSTPFRKNYLLNGRTKLKLE----NFAYNASTEISSPKISEK 67


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 679 ARSMFRHHRTSNCSYEQQCTVRQS 608
           A+   +HH  + CS E+Q T++ S
Sbjct: 217 AKDFLKHHERNLCSIEKQTTLKNS 240


>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 328

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 201 FRPKLPRPVIDLQS-CELSSPETTFDRYYDRIGNDPNCEFIVDN 73
           ++P    P+ D+Q   E++ PE++   ++  I  +   EF VDN
Sbjct: 260 YKPVKVIPIADIQDVAEINVPESSHKYFFTVITQNKPIEFRVDN 303


>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -3

Query: 257 SKLLKQIPKSTVKFRSGVRFVLNYPDLLSIYR 162
           SKLL+   ++ VKF +   F L+YPDL  +Y+
Sbjct: 270 SKLLRLPEETFVKFLNA-SFRLDYPDLSYLYQ 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,902,565
Number of Sequences: 5004
Number of extensions: 60206
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)