Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12k07
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    27   0.23 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    25   0.53 
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    23   2.1  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    23   2.1  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               21   8.6  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 459 LDSVESIQSNIKNDFDDIRINVTSLRRYSSEL 364
           +DS  +I ++   D+D+   N   L RY  EL
Sbjct: 544 IDSANTISNSSLQDYDETEFNGMELARYMGEL 575


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 187 TPTCYRSTELRIIVSRDNVRSILRSDRKRSQLRIHSR 77
           TPT Y S E    ++ +NV+ +L S      +R+++R
Sbjct: 99  TPTVYVSNEPSSAITGNNVKDVLVSIDPSGMVRLNTR 135


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = -2

Query: 462 DLDSVESIQSNIKNDFDDIRINVTSLRRYSSELITLGPLIESDHGNWVLSVFYPDID 292
           D   ++ IQS I+N    + I       Y+       P+IE  HG +  +  +P  D
Sbjct: 30  DSTLLDCIQSGIENLDSGVGIYAPDAEAYTLFADLFDPIIEDYHGGFKKTDKHPPKD 86


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = -2

Query: 462 DLDSVESIQSNIKNDFDDIRINVTSLRRYSSELITLGPLIESDHGNWVLSVFYPDID 292
           D   ++ IQS I+N    + I       Y+       P+IE  HG +  +  +P  D
Sbjct: 46  DSTLLDCIQSGIENLDSGVGIYAPDAEAYTLFADLFDPIIEDYHGGFKKTDKHPPKD 102


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 233 KSTVKFRSGVRFVLNYPDLLS 171
           KST K  +G+ F++ +  LLS
Sbjct: 123 KSTDKCENGLNFIICFSKLLS 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,705
Number of Sequences: 438
Number of extensions: 4614
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)