Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12k06
(224 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex det... 21 2.5
DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex det... 21 2.5
DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex det... 21 2.5
DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex det... 21 2.5
DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex det... 21 2.5
DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex det... 21 2.5
DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex det... 21 2.5
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 21 2.5
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 21 2.5
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 21 2.5
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 21 2.5
AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex det... 21 2.5
AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 21 2.5
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 21 2.5
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 21 2.5
DQ855484-1|ABH88171.1| 130|Apis mellifera chemosensory protein ... 20 3.2
AJ973401-1|CAJ01448.1| 130|Apis mellifera hypothetical protein ... 20 3.2
AF481963-1|AAN59784.1| 130|Apis mellifera antennal-specific pro... 20 3.2
AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139 prot... 20 3.2
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 19 7.5
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 19 7.5
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 19 7.5
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 19 7.5
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 19 7.5
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 19 7.5
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 19 7.5
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 19 7.5
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 19 7.5
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 19 7.5
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 19 7.5
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 19 7.5
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 19 7.5
AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 19 7.5
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 19 7.5
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 19 7.5
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 19 7.5
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 19 7.5
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 19 9.9
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 19 9.9
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 19 9.9
AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein. 19 9.9
>DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.6 bits (41), Expect = 2.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 75 KYRLRH*FKCSFKEERSSGNSQSKRRCTFENS 170
+Y H K EER+S N S+ R +NS
Sbjct: 18 RYEKLHNEKEKLLEERTSRNRYSRSREREQNS 49
>DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.6 bits (41), Expect = 2.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 75 KYRLRH*FKCSFKEERSSGNSQSKRRCTFENS 170
+Y H K EER+S N S+ R +NS
Sbjct: 18 RYEKLHNEKEKLLEERTSRNRYSRSREREQNS 49
>DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.6 bits (41), Expect = 2.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 75 KYRLRH*FKCSFKEERSSGNSQSKRRCTFENS 170
+Y H K EER+S N S+ R +NS
Sbjct: 18 RYEKLHNEKEKLLEERTSRNRYSRSREREQNS 49
>DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.6 bits (41), Expect = 2.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 75 KYRLRH*FKCSFKEERSSGNSQSKRRCTFENS 170
+Y H K EER+S N S+ R +NS
Sbjct: 18 RYEKLHNEKEKLLEERTSRNRYSRSREREQNS 49
>DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.6 bits (41), Expect = 2.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 75 KYRLRH*FKCSFKEERSSGNSQSKRRCTFENS 170
+Y H K EER+S N S+ R +NS
Sbjct: 18 RYEKLHNEKEKLLEERTSRNRYSRSREREQNS 49
>DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.6 bits (41), Expect = 2.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 75 KYRLRH*FKCSFKEERSSGNSQSKRRCTFENS 170
+Y H K EER+S N S+ R +NS
Sbjct: 18 RYEKLHNEKEKLLEERTSRNRYSRSREREQNS 49
>DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.6 bits (41), Expect = 2.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 75 KYRLRH*FKCSFKEERSSGNSQSKRRCTFENS 170
+Y H K EER+S N S+ R +NS
Sbjct: 18 RYEKLHNEKEKLLEERTSRNRYSRSREREQNS 49
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 20.6 bits (41), Expect = 2.5
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -2
Query: 154 HLRLLWLLPEERSSLKEHL 98
H R +WL+ +ER E L
Sbjct: 38 HRREVWLIQQEREREHERL 56
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 20.6 bits (41), Expect = 2.5
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -2
Query: 154 HLRLLWLLPEERSSLKEHL 98
H R +WL+ +ER E L
Sbjct: 38 HRREVWLIQQEREREHERL 56
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 20.6 bits (41), Expect = 2.5
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -2
Query: 154 HLRLLWLLPEERSSLKEHL 98
H R +WL+ +ER E L
Sbjct: 38 HRREVWLIQQEREREHERL 56
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 20.6 bits (41), Expect = 2.5
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -2
Query: 154 HLRLLWLLPEERSSLKEHL 98
H R +WL+ +ER E L
Sbjct: 38 HRREVWLIQQEREREHERL 56
>AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 20.6 bits (41), Expect = 2.5
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -2
Query: 154 HLRLLWLLPEERSSLKEHL 98
H R +WL+ +ER E L
Sbjct: 38 HRREVWLIQQEREREHERL 56
>AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 20.6 bits (41), Expect = 2.5
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -2
Query: 154 HLRLLWLLPEERSSLKEHL 98
H R +WL+ +ER E L
Sbjct: 38 HRREVWLIQQEREREHERL 56
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 20.6 bits (41), Expect = 2.5
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -2
Query: 154 HLRLLWLLPEERSSLKEHL 98
H R +WL+ +ER E L
Sbjct: 38 HRREVWLIQQEREREHERL 56
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 20.6 bits (41), Expect = 2.5
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -2
Query: 154 HLRLLWLLPEERSSLKEHL 98
H R +WL+ +ER E L
Sbjct: 38 HRREVWLIQQEREREHERL 56
>DQ855484-1|ABH88171.1| 130|Apis mellifera chemosensory protein 3
protein.
Length = 130
Score = 20.2 bits (40), Expect = 3.2
Identities = 6/14 (42%), Positives = 10/14 (71%)
Frame = -1
Query: 65 NKGKLWKDIKHKYE 24
NK +LW + +KY+
Sbjct: 97 NKPELWDSLANKYD 110
>AJ973401-1|CAJ01448.1| 130|Apis mellifera hypothetical protein
protein.
Length = 130
Score = 20.2 bits (40), Expect = 3.2
Identities = 6/14 (42%), Positives = 10/14 (71%)
Frame = -1
Query: 65 NKGKLWKDIKHKYE 24
NK +LW + +KY+
Sbjct: 97 NKPELWDSLANKYD 110
>AF481963-1|AAN59784.1| 130|Apis mellifera antennal-specific
protein 3c precursor protein.
Length = 130
Score = 20.2 bits (40), Expect = 3.2
Identities = 6/14 (42%), Positives = 10/14 (71%)
Frame = -1
Query: 65 NKGKLWKDIKHKYE 24
NK +LW + +KY+
Sbjct: 97 NKPELWDSLANKYD 110
>AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139
protein.
Length = 232
Score = 20.2 bits (40), Expect = 3.2
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -2
Query: 223 VIFLRKFSKCPCGLH*IVLFSNVHLRLL 140
++F+ F CGL + L +HL++L
Sbjct: 11 LLFIFNFVFAVCGLGILTLGVLIHLQIL 38
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 19.0 bits (37), Expect = 7.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 154 HLRLLWLLPEERSSLKEH 101
H R WL+ +ER +EH
Sbjct: 38 HRREAWLIQQERE--REH 53
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 19.0 bits (37), Expect = 7.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 154 HLRLLWLLPEERSSLKEH 101
H R WL+ +ER +EH
Sbjct: 38 HRREAWLIQQERE--REH 53
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 19.0 bits (37), Expect = 7.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 154 HLRLLWLLPEERSSLKEH 101
H R WL+ +ER +EH
Sbjct: 38 HRREAWLIQQERE--REH 53
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 19.0 bits (37), Expect = 7.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 154 HLRLLWLLPEERSSLKEH 101
H R WL+ +ER +EH
Sbjct: 38 HRREAWLIQQERE--REH 53
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 19.0 bits (37), Expect = 7.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 154 HLRLLWLLPEERSSLKEH 101
H R WL+ +ER +EH
Sbjct: 38 HRREAWLIQQERE--REH 53
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 19.0 bits (37), Expect = 7.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 154 HLRLLWLLPEERSSLKEH 101
H R WL+ +ER +EH
Sbjct: 38 HRREAWLIQQERE--REH 53
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 19.0 bits (37), Expect = 7.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 154 HLRLLWLLPEERSSLKEH 101
H R WL+ +ER +EH
Sbjct: 38 HRREAWLIQQERE--REH 53
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 19.0 bits (37), Expect = 7.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 154 HLRLLWLLPEERSSLKEH 101
H R WL+ +ER +EH
Sbjct: 38 HRREAWLIQQERE--REH 53
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 19.0 bits (37), Expect = 7.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 154 HLRLLWLLPEERSSLKEH 101
H R WL+ +ER +EH
Sbjct: 38 HRREAWLIQQERE--REH 53
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 19.0 bits (37), Expect = 7.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 154 HLRLLWLLPEERSSLKEH 101
H R WL+ +ER +EH
Sbjct: 38 HRREAWLIQQERE--REH 53
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 19.0 bits (37), Expect = 7.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 154 HLRLLWLLPEERSSLKEH 101
H R WL+ +ER +EH
Sbjct: 38 HRREAWLIQQERE--REH 53
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 19.0 bits (37), Expect = 7.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 154 HLRLLWLLPEERSSLKEH 101
H R WL+ +ER +EH
Sbjct: 38 HRREAWLIQQERE--REH 53
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 19.0 bits (37), Expect = 7.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 154 HLRLLWLLPEERSSLKEH 101
H R WL+ +ER +EH
Sbjct: 38 HRREAWLIQQERE--REH 53
>AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex
determiner protein.
Length = 385
Score = 19.0 bits (37), Expect = 7.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 154 HLRLLWLLPEERSSLKEH 101
H R WL+ +ER +EH
Sbjct: 38 HRREAWLIQQERE--REH 53
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 19.0 bits (37), Expect = 7.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 154 HLRLLWLLPEERSSLKEH 101
H R WL+ +ER +EH
Sbjct: 38 HRREAWLIQQERE--REH 53
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 19.0 bits (37), Expect = 7.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 154 HLRLLWLLPEERSSLKEH 101
H R WL+ +ER +EH
Sbjct: 38 HRREAWLIQQERE--REH 53
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 19.0 bits (37), Expect = 7.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 154 HLRLLWLLPEERSSLKEH 101
H R WL+ +ER +EH
Sbjct: 38 HRREAWLIQQERE--REH 53
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 19.0 bits (37), Expect = 7.5
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +1
Query: 106 LSKKNVPPATAKAN 147
+SKK + PAT K +
Sbjct: 269 ISKKKLSPATPKGS 282
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 18.6 bits (36), Expect = 9.9
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = +2
Query: 56 FLC*GFQISIETLIQMFFQRRTFLRQQ 136
+LC G +S L+ ++ TF+R++
Sbjct: 202 YLCPGMALSQFDLMGSPYRNLTFVRRE 228
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 18.6 bits (36), Expect = 9.9
Identities = 5/10 (50%), Positives = 7/10 (70%)
Frame = +1
Query: 34 CLMSFHNFPL 63
C+M H +PL
Sbjct: 161 CMMDLHYYPL 170
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 18.6 bits (36), Expect = 9.9
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = -2
Query: 172 VLFSNVHLRLLW 137
++ SNV LR +W
Sbjct: 72 IMKSNVWLRFIW 83
>AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein.
Length = 366
Score = 18.6 bits (36), Expect = 9.9
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2
Query: 145 LLWLLPEERSSLKEHLN*CLNRYLKT 68
L++ P+E +EH N + R L+T
Sbjct: 89 LMYENPDEEKRYQEHPNGKILRELQT 114
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,730
Number of Sequences: 438
Number of extensions: 1406
Number of successful extensions: 41
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used: 3533460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)
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