Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12k01
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr ...    36   0.004
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    27   2.0  

>SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 392

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
 Frame = +1

Query: 157 SLYLKVRLFGVRISSAMFLIELQLRLLQSNTS*RGFFCYI---F*ILIFKWFSGKVAKMS 327
           +L L V   GV I   +FL E++ R LQS    R F C I     +++F W   KV K+ 
Sbjct: 128 NLRLDVIDVGVEIDEDLFLKEVEQRFLQSKP--RAFICDILSSMPVILFPW--EKVVKLC 183

Query: 328 LKQNILSPLD 357
            K NI+S +D
Sbjct: 184 KKYNIVSIID 193


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 105 YRGVKGYLV*ATFRLIFIFVFKGTFIWCQNQ 197
           Y G+  Y + A   L+F  VF G   WC +Q
Sbjct: 659 YTGLDSYNIFAVGILLFTSVFAGALWWCLHQ 689


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,524,966
Number of Sequences: 5004
Number of extensions: 46624
Number of successful extensions: 81
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)