Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12j13
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    24   1.5  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   4.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   4.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   8.1  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 475 GYKIFTIYELTEVSKLWIRSCTN 543
           GY I  +YELT++ K ++    N
Sbjct: 264 GYTIDRLYELTKIDKWFLHKMKN 286


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 490 TIYELTEVSKLWIRSCTNNHITIFSFESLVRDQ 588
           T + +  + K+W R  T   +T  SF+ L  D+
Sbjct: 183 TPFTVLPLLKVWGRYTTEGFLTTCSFDFLTDDE 215


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 490 TIYELTEVSKLWIRSCTNNHITIFSFESLVRDQ 588
           T + +  + K+W R  T   +T  SF+ L  D+
Sbjct: 183 TPFTVLPLLKVWGRYTTEGFLTTCSFDFLTDDE 215


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 27  ENKYEDYKLSELKQITNK 80
           +N+YE     +LK+ITN+
Sbjct: 346 QNEYEQPSEEDLKRITNQ 363


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,089
Number of Sequences: 438
Number of extensions: 3505
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)