Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12j04
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   3.7  
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom...    27   3.7  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    26   6.4  
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    26   6.4  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 196  IVVFAVHILDVFFLINGNIXKKKLYXTNVI 107
            I+ + +H++ + F  NGN  K+K Y T +I
Sbjct: 1697 IIQYIIHLILLEFDFNGNNKKQKEYVTQLI 1726


>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 449 FNVLNMPTTNWICS 490
           FN LN+P T WIC+
Sbjct: 90  FNTLNVPITLWICA 103


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 200 LHCCICGTYIG 168
           +HCC C TYIG
Sbjct: 70  IHCCRCHTYIG 80


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -3

Query: 243 FFFLLIETQLNIFGASLLYLRYIYWMCSFL 154
           FF+L +    +++GA      +++W CS+L
Sbjct: 6   FFYLALWVIQSVYGAWDWAKNWVFWTCSYL 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,084,055
Number of Sequences: 5004
Number of extensions: 33394
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)